AgBioData-LIST May 2024

agbiodata-list@bioinfo.wsu.edu

1 participants
4 discussions

REMINDER - Monthly Webinar Next Wed, June 5th, at 12 PM CT

by Annarita Marrano

Hi everybody, Join us next Wed, June 5th, at 12 PM CDT for our monthly webinar. *Ethy Cannon *(USDA-ARS) will talk about the *pan-genomic resources at MaizeGDB*. I have included below more details about the webinar and the Zoom link to attend the webinar. I hope you will join us. Best, Annarita :-:-:-:-:-:-:-:-:-:-:-:-:-:-:-:-:-:-: *Abstracts:* *Pan-genomic resources at MaizeGDB* Pan-genomes, encompassing the entirety of genetic sequences found in a collection of genome assemblies within a clade, can be more useful than single reference genomes. This is especially true for Zea mays, which has a particularly diverse and complex genome. Presenting full pan-genome data is challenging, especially for a diverse species, but valuable when pan-genomic data can be linked to extensive gene models and gene data, including classical gene information, markers, insertions, expression and proteomic data, and protein structures, as is the case at MaizeGDB. I will present the pan-gene analysis pipeline Pandagma, and MaizeGDB’s pan-gene data centre, which offers a variety of browsing and visualizations, including sequence alignment visualization, gene trees and more, which enables exploration of pan-genes in Zea. *| 1P ET | 12P CT | 11A MT | 10A PT |* Find your local time here <https://www.timeanddate.com/worldclock/fixedtime.html?msg=AgBioData+Monthly…> *Join Zoom Meetinghttps://us06web.zoom.us/j/82038356125?pwd=YVFMRElMdEpHZmtObXFvZlA4QVFXQT09 <https://us06web.zoom.us/j/82038356125?pwd=YVFMRElMdEpHZmtObXFvZlA4QVFXQT09>* Meeting ID: 820 3835 6125 Passcode: 160683

5 months, 3 weeks

REMINDER: Please participate to an AgBioData survey on FAIR data management

by Annarita Marrano

Dear AgBioData members, This is a friendly reminder to participate in our *brief survey* on the impact of AgBioData activities on FAIR data management awareness if you haven't already done so. This survey is a follow-up to a similar one we ran in 2022 and will help us quantify the impact of our efforts during the three-year National Science Foundation (NSF) RCN project on increasing the awareness and implementation of FAIR practices in the AgBioData community. Your participation in this survey is crucial for our mission to enhance FAIR data in agricultural research and will provide insights that can help us define the consortium's directions and secure future funding. Click here <https://tinyurl.com/AgBioData24> to participate in this survey. Please submit your answers *by May 31*. We would like to emphasize that your participation in this survey is entirely voluntary and anonymous. For general questions or assistance accessing and completing the survey, please feel free to write to me or contact Dr Michael Coe at michael(a)cedarlakeresearch.com. Thanks for your contribution to AgBioData and for being part of our community! Best, Annarita

5 months, 4 weeks

Please participate to an AgBioData survey on FAIR data management

by Annarita Marrano

Dear AgBioData members, We'd like to invite you to participate *in a brief survey* to measure the impact of AgBioData activities on FAIR data management awareness. This is a follow-up survey from a similar one we ran in 2022 and will help us quantify the impact of our efforts during the three-year National Science Foundation (NSF) RCN project on increasing the awareness and implementation of FAIR practices in the AgBioData community. Your participation in this survey is crucial for our mission to enhance FAIR data in agricultural research and will provide insights that can help us define the consortium's directions and secure future funding. Click here <https://tinyurl.com/AgBioData24> to participate in this survey. Please submit your answers *by May 31*. We would like to emphasize that your participation in this survey is entirely voluntary and anonymous. For general questions or assistance accessing and completing the survey, please feel free to write to me or contact Dr Michael Coe at michael(a)cedarlakeresearch.com. Thanks for your contribution to AgBioData and for being part of our community! Best, Annarita

6 months

Charla Lambert on the SACNAS organization, this Monday (May 6) at 11 AM ET

by Annarita Marrano

Hi everybody, The DEI Recruiting WG invites everyone to join our meeting *this Monday, May 6, at 11 AM*. Dr Charla Lambert, president of the Advancing Chicanos/Hispanics and Native Americans in Science (SACNAS) organization, will talk about SACNAS, its 50-year history diversifying science in the U.S., and how it might benefit your group's outreach, networking, and recruitment activities. Zoom link to participate: https://us06web.zoom.us/j/89060768261?pwd=TC9EOWR3UVdQS3UxNGZWQTEvWDFaZz09. I hope you will join numerous. Best, Annarita

6 months, 2 weeks

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AgBioData-LIST May 2024