Hi everybody,
This is a friendly reminder of *tomorrow's* monthly webinar (*March 1st*)*.
*We will have *Irene Cobo Simón* from the Institute of Forest Science
(ICIFOR-INIA, CSIC; Spain) talking about the CartograPlant
<https://treegenesdb.org/ct/about>, a web-based application that
integrates, visualizes, and analyzes genotypic, phenotypic, environmental
data, and their associated metadata, from georeferenced plants.
I have included below more details about the webinar and the zoom link to
attend the webinar.
I hope you will join us.
Best,
Annarita
:-:-:-:-:-:-:-:-:-:-:-:-:-:-:-:-:-:-:
Presenters: Dr. Irene Cobo Simón, Institute of Forest Science (ICIFOR-INIA,
CSIC; Spain)
Abstract:
*CartograPlant: Cyberinfrastructure to improve plant health and
productivity in the context of a changing climate.*
Climate change is threatening plant health and productivity at all spatial
scales. To date, it remains largely unknown whether plant breeding and
agricultural management practices can keep pace with the rate and direction
of environmental change, as well as species’ rate of adaptation to rapid
environmental change. In addition, the incidence of invasive pests and
pathogens is increasing as a consequence of globalization. This trend is
being exacerbated by climate change. Thus, future plant health and
productivity will depend on the match between genotypes (and their
resulting phenotypes) and new environments. However, these analyses are
challenging since they require the integration of diverse data types,
usually decentralized and lacking in standardization: genotypic, phenotypic
and environmental. Hence, centralized and up-to-date platforms which
integrate, visualize and analyze high-throughput biological data are key,
especially in the current big data era in plant biology. CartograPlant (
https://cartograplant.org/) is a web-based application that integrates,
visualizes, and analyzes genotypic, phenotypic, environmental data, and
their associated metadata, from georeferenced plants. Environmental data is
available through advanced integration of global and regional layers. The
genotype and phenotype metrics are collected through direct submission of
studies at the time of publication or through the biocuration efforts of
the affiliated databases and applications (TreeGenes, BIEN, TreeSnap). Data
analysis is enabled by accessing the metadata associated with the public
studies and providing appropriate workflows through Galaxy (
https://galaxyproject.org/). This metadata collection, using ontologies and
standards, allows data integration and analysis coming from different
studies, which is key to perform both mega and meta-analysis. Mega-analysis
and meta-analysis of GWAS (GxP association) and landscape genomics (GxE
association) studies can improve the power to detect association signals by
increasing sample size and by examining more variants throughout the genome
than each dataset alone. Thus, they allow users to answer unprecedented and
ambitious adaptive questions, taking advantage of the potential of
high-throughput biological data. This talk will describe the recent updates
in data sources, functionalities, and analytic workflows offered by
CartograPlant.
*| 1P ET | 12P CT | 11A MT | 10A PT |*
Find your local time here
<https://www.timeanddate.com/worldclock/fixedtime.html?msg=AgBioData+monthly…>
Annarita Marrano is inviting you to a scheduled Zoom meeting.
Topic: AgBioData Monthly Webinar
Time: This is a recurring meeting Meet anytime
Join Zoom Meeting
https://us06web.zoom.us/j/82038356125?pwd=YVFMRElMdEpHZmtObXFvZlA4QVFXQT09
Meeting ID: 820 3835 6125
Passcode: 160683
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Meeting ID: 820 3835 6125
Passcode: 160683
Find your local number: https://us06web.zoom.us/u/kF3akiFg7
Hi everybody,
Our next monthly webinar is next Wed, *March 1st. *Irene Cobo Simón from
the Institute of Forest Science (ICIFOR-INIA, CSIC; Spain) will talk about
the CartograPlant <https://treegenesdb.org/ct/about>, a web-based
application that integrates, visualizes, and analyzes genotypic,
phenotypic, environmental data, and their associated metadata, from
georeferenced plants.
I have included below more details about the webinar and the zoom link to
attend the webinar.
I hope you will join us.
Best,
Annarita
:-:-:-:-:-:-:-:-:-:-:-:-:-:-:-:-:-:-:
Presenters: Dr. Irene Cobo Simón, Institute of Forest Science (ICIFOR-INIA,
CSIC; Spain)
Abstract:
*CartograPlant: Cyberinfrastructure to improve plant health and
productivity in the context of a changing climate.*
Climate change is threatening plant health and productivity at all spatial
scales. To date, it remains largely unknown whether plant breeding and
agricultural management practices can keep pace with the rate and direction
of environmental change, as well as species’ rate of adaptation to rapid
environmental change. In addition, the incidence of invasive pests and
pathogens is increasing as a consequence of globalization. This trend is
being exacerbated by climate change. Thus, future plant health and
productivity will depend on the match between genotypes (and their
resulting phenotypes) and new environments. However, these analyses are
challenging since they require the integration of diverse data types,
usually decentralized and lacking in standardization: genotypic, phenotypic
and environmental. Hence, centralized and up-to-date platforms which
integrate, visualize and analyze high-throughput biological data are key,
especially in the current big data era in plant biology. CartograPlant (
https://cartograplant.org/) is a web-based application that integrates,
visualizes, and analyzes genotypic, phenotypic, environmental data, and
their associated metadata, from georeferenced plants. Environmental data is
available through advanced integration of global and regional layers. The
genotype and phenotype metrics are collected through direct submission of
studies at the time of publication or through the biocuration efforts of
the affiliated databases and applications (TreeGenes, BIEN, TreeSnap). Data
analysis is enabled by accessing the metadata associated with the public
studies and providing appropriate workflows through Galaxy (
https://galaxyproject.org/). This metadata collection, using ontologies and
standards, allows data integration and analysis coming from different
studies, which is key to perform both mega and meta-analysis. Mega-analysis
and meta-analysis of GWAS (GxP association) and landscape genomics (GxE
association) studies can improve the power to detect association signals by
increasing sample size and by examining more variants throughout the genome
than each dataset alone. Thus, they allow users to answer unprecedented and
ambitious adaptive questions, taking advantage of the potential of
high-throughput biological data. This talk will describe the recent updates
in data sources, functionalities, and analytic workflows offered by
CartograPlant.
*| 1P ET | 12P CT | 11A MT | 10A PT |*
Find your local time here
<https://www.timeanddate.com/worldclock/fixedtime.html?msg=AgBioData+monthly…>
Annarita Marrano is inviting you to a scheduled Zoom meeting.
Topic: AgBioData Monthly Webinar
Time: This is a recurring meeting Meet anytime
Join Zoom Meeting
https://us06web.zoom.us/j/82038356125?pwd=YVFMRElMdEpHZmtObXFvZlA4QVFXQT09
Meeting ID: 820 3835 6125
Passcode: 160683
One tap mobile
+19292056099,,82038356125#,,,,*160683# US (New York)
+13017158592,,82038356125#,,,,*160683# US (Washington DC)
Dial by your location
+1 929 205 6099 US (New York)
+1 301 715 8592 US (Washington DC)
+1 305 224 1968 US
+1 309 205 3325 US
+1 312 626 6799 US (Chicago)
+1 646 931 3860 US
+1 253 205 0468 US
+1 253 215 8782 US (Tacoma)
+1 346 248 7799 US (Houston)
+1 360 209 5623 US
+1 386 347 5053 US
+1 507 473 4847 US
+1 564 217 2000 US
+1 669 444 9171 US
+1 669 900 6833 US (San Jose)
+1 689 278 1000 US
+1 719 359 4580 US
Meeting ID: 820 3835 6125
Passcode: 160683
Find your local number: https://us06web.zoom.us/u/kF3akiFg7
