AgBioData-LIST October 2022

agbiodata-list@bioinfo.wsu.edu

2 participants
5 discussions

AgBioData monthly webinar - Next Wed, November 2nd

by Annarita Marrano

Hi everybody, Next Wed, *November 2nd*, we will have *Jennifer Cross <https://www.drjenicross.com/>* from Colorado State University talking about the "*Science of Team Science*" and how team evaluation and coaching can help interdisciplinary teams advance science and overcome institutional and infrastructural challenges and barriers Below you can find more details about the webinar and the zoom link to attend the webinar. We hope you will join us. Best, Annarita :-:-:-:-:-:-:-:-:-:-:-:-:-:-:-:-:-:-: Presenters: Dr. Chris Mungall, Lawrence Berkeley National Laboratory Host: Prof. John McNamara Abstract: *Science of Team Science: Using Developmental Evaluation to Advance Transdisciplinary Teams and Evolve Science.* For the past 20 years or more, science has been evolving to answer more complex questions, which require more complex teams. While scientists are eager to engage with diverse colleagues, academic institutions are slow to change and present a variety of barriers to advancing science. I will explore how the field “science of team science” has been growing and how team assessment, evaluation, and coaching can help teams become more effective. Case studies of interdisciplinary teams will be shared to illustrate how developmental evaluation and assessment can help accelerate team growth, and overcome institutional and infrastructural challenges and barriers. *| 1P ET | 12P CT | 11A MT | 10A PT |* Find your local time here <https://www.timeanddate.com/worldclock/fixedtime.html?msg=AgBioData+Monthly…> Annarita Marrano is inviting you to a scheduled Zoom meeting. Topic: AgBioData Monthly Webinar Time: This is a recurring meeting Meet anytime Join Zoom Meeting https://us06web.zoom.us/j/82038356125?pwd=YVFMRElMdEpHZmtObXFvZlA4QVFXQT09 Meeting ID: 820 3835 6125 Passcode: 160683 One tap mobile +13017158592,,82038356125#,,,,*160683# US (Washington DC) +13092053325,,82038356125#,,,,*160683# US Dial by your location +1 301 715 8592 US (Washington DC) +1 309 205 3325 US +1 312 626 6799 US (Chicago) +1 646 931 3860 US +1 929 205 6099 US (New York) +1 386 347 5053 US +1 564 217 2000 US +1 669 444 9171 US +1 669 900 6833 US (San Jose) +1 719 359 4580 US +1 253 215 8782 US (Tacoma) +1 346 248 7799 US (Houston) +1 360 209 5623 US Meeting ID: 820 3835 6125 Passcode: 160683 Find your local number: https://us06web.zoom.us/u/kF3akiFg7

2 years

Reminder:CALL for IDEAS for new AgBioData working groups!!!!!

by Annarita Marrano

Dear AgBioData community, You are still on time to suggest *new working groups for **Year 2 *of our NSF Research Coordination Network <http://agbiodata.org/node/487> grant about defining community-based data sharing and management standards and promoting an equitable and sustainable data ecosystem in agriculture. As the technologies and approaches for generating, analyzing, and curating data keep evolving, new issues and priorities related to data sharing arise. *We would like to know from you what these priorities are and how we can address them in new AgBioData working groups*. Please share your feedback and suggestions through *this Google form <https://forms.gle/nnGdXhfoTR64z3Ru9>* by *October 28th*! After we have received your working group ideas, the steering committee will 1) decide on the working group roster for year 2 and 2) launch the participant sign-up for the working groups of Year 2. We anticipate that the new working groups will start on January 11th, 2023. Thank you for contributing to AgBioData's mission of making agricultural data FAIR! Best regards, Annarita Marrano On behalf of the AgBioData Steering Committee

2 years

CALL for IDEAS for new AgBioData working groups!!!!!

by Annarita Marrano

Dear AgBioData community, *We are soliciting ideas for new working groups for **Year 2 *of our NSF Research Coordination Network <http://agbiodata.org/node/487> grant about defining community-based standards of data sharing and management, and promoting an equitable and sustainable data ecosystem in agriculture. As the technologies and approaches for generating, analyzing, and curating data keep evolving, new issues and priorities related to data sharing arise. *We would like to know from you what these priorities are and how we can address them in new AgBioData working groups*. Please share your feedback and suggestions through *this Google form <https://forms.gle/nnGdXhfoTR64z3Ru9>* by *October 28th*! After we have received your working group ideas, the steering committee will 1) decide on the working group roster for year 2, and 2) launch the participant sign up for the working groups of Year 2. We anticipate that the new working groups will start January 11th, 2023. Thank you for contributing to AgBioData mission of making agricultural data FAIR! Best regards, Annarita Marrano On Behalf of the AgBioData Steering Committee

2 years

AgBioData monthly webinar - TOMORROW, October 5th

by Annarita Marrano

Hi everybody, This is a gentle reminder of tomorrow's webinar with *Chris Mungall <https://bids.berkeley.edu/people/chris-mungall>* from the Lawrence Berkeley National Laboratory. He will provide a practical guide on Gene Ontology <http://geneontology.org/> and how to use it for functional annotation in plants and animals. Below you can find more details about the webinar and the zoom link to attend the webinar. We hope you will join us. Best, Annarita :-:-:-:-:-:-:-:-:-:-:-:-:-:-:-:-:-:-: Presenters: Dr. Chris Mungall, Lawrence Berkeley National Laboratory Host: Dr. Tanya Berardini Abstract: *The Gene Ontology: Making functional annotation of plants and animals FAIR.* The Gene Ontology is one of the most widely used databases in the biosciences, covering functional annotation of genes and gene products across a wide range of species. The GO is ubiquitously used to analyse a variety of types of high-throughput experimental data. Originally created to unify functional annotation across a handful of model organism databases, the GO has grown to encompass more species, and the structure of the GO has been extended to integrate with other ontologies such as CHEBI and the Plant Ontology. The structure of annotations has also evolved, and the GO now includes more expressive pathway-oriented annotations in the form of GO-CAMs (Causal Activity Models). In this talk I will give a practical guide to the structure of GO, how to find and request terms, how to search and create annotations, and how to use GO tools. I will also talk about how the broader AgBioData can contribute to the GO consortium to help seed functional annotation efforts in a more diverse range of organisms, and in particular with agriculturally relevant species. *| 1P ET | 12P CT | 11A MT | 10A PT |* Find your local time here <https://www.timeanddate.com/worldclock/fixedtime.html?msg=AgBioData+webinar…> Topic: AgBioData Monthly Webinar Time: This is a recurring meeting Meet anytime Join Zoom Meeting https://us06web.zoom.us/j/82038356125?pwd=YVFMRElMdEpHZmtObXFvZlA4QVFXQT09 Meeting ID: 820 3835 6125 Passcode: 160683 One tap mobile +13017158592,,82038356125#,,,,*160683# US (Washington DC) +13092053325,,82038356125#,,,,*160683# US Dial by your location +1 301 715 8592 US (Washington DC) +1 309 205 3325 US +1 312 626 6799 US (Chicago) +1 646 931 3860 US +1 929 205 6099 US (New York) +1 386 347 5053 US +1 564 217 2000 US +1 669 444 9171 US +1 669 900 6833 US (San Jose) +1 719 359 4580 US +1 253 215 8782 US (Tacoma) +1 346 248 7799 US (Houston) Meeting ID: 820 3835 6125 Passcode: 160683 Find your local number: https://us06web.zoom.us/u/kF3akiFg7

2 years

AG2PI Field Day: IP in Livestock and Plant Genetics & Breeding

by Scott, Nicole M [AGRON]

Dear AgBioData community members, The next Agricultural Genome to Phenome Initiative (AG2PI) Field Day will be "IP in livestock and plant genetics & breeding" and will be on Wednesday, October 19 from 10:30 AM to 12:00 PM (Central Time, UTC-5). In this field day, we will hear from two patent attorneys regarding intellectual property and patent policies as they apply to agricultural research in public and private sectors. We invite you to register for this Zoom event at https://www.ag2pi.org/workshops-and-activities/field-day-2022-10-19/, where you will also find additional information. Upon registration, you will receive a confirmation email with information about joining the meeting. If you are unable to attend the live session, then you will be able to find a recording at ag2pi.org/<https://www.ag2pi.org/>, at a later date. You do not need to register to view the recording; it is readily available on the AG2PI website soon after the close of the event (generally within 24 hours). Please share the attached, digitally accessible flyer with your colleagues or students and encourage them to attend. Kind regards, Nicole ------------------------ Nicole Scott, PhD Program Specialist Agricultural Genome to Phenome Initiative Iowa State University 1111 WOI Rd Ames, IA 50011 office: 1077 Roy J. Carver Co-Lab phone: 515-294-3945 ag2pi.org<https://www.ag2pi.org/> *** If you no longer wish to receive messages from AG2PI, then please visit https://www.ag2pi.org/join-ag2pi/unsubscribe/ to unsubscribe *** Please note, you cannot unsubscribe if you are receiving this message through a third party ***

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AgBioData-LIST October 2022