GDR-LIST

gdr-list@bioinfo.wsu.edu

335 discussions

Elections for 2014 RosExec

by John-David Swanson

Hello everybody! I hope you all had a wonderful and productive summer and are all ready for the fall to start! It is now time to start thinking about RosExec elections for the upcoming year. Five US people will be rotating off at the end of this year (Kate Evans, Jay Norelli, Mercey Olmstead, Janet Slovin, and Vance Whitaker). Now, looking at the numbers, we will have the following make up next year with those left: Inst: Univ 6, Gvt 4, Ind 2 Region: South 2, West 6, East 4 So we really need people from industry and/or the South to help bolster representation. We will be looking for nominations over the next few weeks. If you know of someone who may be interested in serving on RosExec, please have them contact me and I can help them, or send me their information and I can contact them. We will need a short Bio from them. I have a timeline in place as follows: Nominations to me By Oct 15, 2013 Voting will be carried out Between Nov 1-15, 2013 Secretary nominations and Election Early December Announcement of Results at PAG Once again, hope you are looking forward to your new semesters and look forward to catching up with you soon! JD JD Swanson, Ph.D. Asst. Professor of Biology and Class Dean Department of Biology and Biomedical Sciences Salve Regina University 100 Ochre Point Ave Newport RI 02840 Ph) 401-341-3165 jd.swanson(a)salve.edu http://Swanson.salvereginablogs.com To book an appointment please go to http://swansonjd.youcanbookme.com

12 years, 10 months

Re: [GDR] SNP nomenclature working group

by Bassi Daniele

Dear Dorrie can you please include also Filippo (filippo.geuna(a)unimi.it), from my Department?. He is interrsted too Regards Daniele At 07:43 02/10/2013, Main, Doreen wrote: >Content-Language: en-US >Content-Type: multipart/alternative; > >boundary="_000_60C36B140008D346BE44DBDA4D5CFD3F1BD41C55EXMB02adwsuedu_" > >Dear Rosaceae Community Members, > >As part of an effort to standardize data for inclusion in GDR we >would like to form a work group to come up with a standardized >nomenclature for SNPs. If you would be interested in participating >in this work group please let us know and we can start the process. > >Many thanks > >Dorrie > > >Dorrie Main, PhD >Associate Professor of Bioinformatics >Department of Horticulture >Washington State University >45 Johnson Hall >Pullman, WA 99164-6414 > >Tel: 509-335-2774 (office) >Email: <mailto:dorrie@wsu.edu>dorrie(a)wsu.edu >URL: <http://www.bioinfo.wsu.edu/>www.bioinfo.wsu.edu > > >_______________________________________________ >Main Bioinformatics Laboratory >GDR-LIST mailing list >GDR-LIST(a)bioinfo.wsu.edu

12 years, 10 months

SNP nomenclature working group

by Main, Doreen

Dear Rosaceae Community Members, As part of an effort to standardize data for inclusion in GDR we would like to form a work group to come up with a standardized nomenclature for SNPs. If you would be interested in participating in this work group please let us know and we can start the process. Many thanks Dorrie Dorrie Main, PhD Associate Professor of Bioinformatics Department of Horticulture Washington State University 45 Johnson Hall Pullman, WA 99164-6414 Tel: 509-335-2774 (office) Email: dorrie(a)wsu.edu<mailto:dorrie@wsu.edu> URL: www.bioinfo.wsu.edu<http://www.bioinfo.wsu.edu/>

12 years, 10 months

Rapid Cycle Crop Breeding Conference

by Dardick, Chris

On behalf of our organizing committee, we would like to invite all of you to the 1st international conference on Rapid Cycle Crop Breeding (RCCB) which will be held January 7 through the 10th, 2014 (the week prior to Plant and Animal Genome) just outside of Washington DC (Landsdowne, VA). There will be four aspects covered; practical breeding systems, science of shortened juvenility, regulatory aspects of using transgenes for generating non-transgenic crops, and a workshop on how to talk about biotechnology to the public. Invited speakers thus far include: Bert Abbott, Sue Gardner, Pace Lubinsky, Magda-Viola Hanke, Leandro Pena, Steve Strauss and Ralph Scorza. Further information is on our website including how to register: http://www.ars.usda.gov/SP2UserFiles/Place/19310505/RCCB%20Conference.docx Submitted abstracts to rapidcyclecropbreeding(a)yahoo.com<mailto:rapidcyclecropbreeding@yahoo.com> will be considered for presentations. Attached is an information sheet with all the details on registration, location and agenda. If further information is needed, please feel free to contact Ralph Scorza, ralph.scorza(a)ars.usda.gov<mailto:ralph.scorza@ars.usda.gov>. Also attached is a flyer for the conference. Chris Dardick Chris Dardick Plant Molecular Biologist/Pathologist USDA ARS Appalachian Fruit Research Station 2217 Wiltshire Road Kearneysville, WV 25430 Office: 304-725-3451 ext. 387 Cell: 304-991-9528 Chris.dardick(a)ars.usda.gov<mailto:Chris.dardick@ars.usda.gov> This electronic message contains information generated by the USDA solely for the intended recipients. Any unauthorized interception of this message or the use or disclosure of the information it contains may violate the law and subject the violator to civil or criminal penalties. If you believe you have received this message in error, please notify the sender and delete the email immediately.

12 years, 10 months

RGC7 will be June 24-26, 2014 in Seattle, WA, USA

by Humann, Jodi Lynn

Hello, On behalf of the RGC7 executive committee (Dorrie Main, Cameron Peace, Kate Evans, Jim McFerson) I would like to invite you to attend the 7th International Rosaceae Genomics Conference to be held in Seattle, Washington, USA from June 24-26, 2014. Attached is a flyer with more details about the conference. You can also view conference details on the website http://<http://www.rosaceae.org/conferences/rgc7>www.rosaceae.org/conferences/rgc7<http://www.rosaceae.org/conferences/rgc7>. We will be providing updates and further details on the website as they become available. Currently, we are determining the interest in a few different pre- and/or post-conference tours. Details about the proposed tours can be viewed from the conference website. Please let us know as soon as possible if you are interested in any of these tours. Please send this information or any questions about the conference to rgc7(a)rosaceae.org<mailto:rgc7@rosaceae.org>. Thank you and we hope to see you in Seattle, Jodi Jodi Humann, Ph.D. Main Lab Bioinformatics Project Coordinator Department of Horticulture Washington State University PO Box 646414 Pullman, WA 99164-6414 509-335-3206 jhumann(a)wsu.edu<mailto:jhumann@wsu.edu>

12 years, 10 months

II International Symposium on Wild Relatives of Subtropical and Temperate Fruit and Nut Crops

by Main, Doreen

________________________________ From: Decroocq Véronique [decroocq(a)bordeaux.inra.fr] Sent: Friday, September 20, 2013 2:54 AM To: Main, Doreen Subject: Re: [GDR] GDR down for maintenance Dear Doreen, Could you please relay the following information on the rosaceae GDR mailing list and WSU's bioinfo list ? AGRI (Azerbaijan Genetic Resources Institute) is planning to organize II International Symposium on Wild Relatives of Subtropical and Temperate Fruit and Nut Crops (http://www.ishs.org/symposium/289) in Baku-Azerbaijan between 7-12th of April, 2014 as International Society for Horticultural Science<http://www.ishs.org/> (ISHS) and Genetic Resources Institute of the Azerbaijan National Academy of Sciences (AGRI), along with other national and international organizations. Registration will be open in the following weeks. Zeynal Akparov Convener of the Conference National Coordinator on Biodiversity and PGRFA Director of the Genetic Resources Institute of ANAS Address: 155, Azadlig ave., AZ1106, Baku, Azerbaijan tel.: (+994 12) 563 91 71; (+994 50) 611 47 40 fax: (+994 12 ) 449 92 21 e-mail: akparov(a)yahoo.com<mailto:akparov@yahoo.com> Thanks for your help véro -- Dr Véronique DECROOCQ (Research Director) INRA Centre de Recherches de Bordeaux IBVM, UMR BFP 'Biologie du Fruit et Pathologie' INRA-Université Bordeaux II Equipe de Virologie CS20032 33882 Villenave d'Ornon (FRANCE) Tel:(33) (0)5 57 12 23 83 Fax:(33) (0)5 57 12 23 84

12 years, 10 months

GDR down for maintenance

by Main, Doreen

Hi Folks, We are currently implementing a new version of GDR, so the site will likely be down for the rest of the day. We will send out an email when it's back online. Sorry for any inconvenience this causes. Cheers Dorrie Dorrie Main, PhD Associate Professor of Bioinformatics Department of Horticulture Washington State University 45 Johnson Hall Pullman, WA 99164-6414 Tel: 509-335-2774 (office) Email: dorrie(a)wsu.edu<mailto:dorrie@wsu.edu> URL: www.bioinfo.wsu.edu<http://www.bioinfo.wsu.edu/>

12 years, 10 months

Job opening at Clemson University

by Ksenija Gasic

Dear Colleagues, Clemson University is hiring an Assistant Professor of Pomology. It is a tenure track faculty position located in Clemson on main campus. I would appreciate if you would show it to potential candidates and encourage them to apply. The position description is attached and it is also available at the following link (https://cubshr9e.clemson.edu/psc/hpprd/EMPLOYEE/HRMS/c/HRS_HRAM.HRS_CE.GBL?&) job ID 12746. The deadline for application is October 15th or until suitable candidate is found. I apologize if you receive this message several times. Thank you very much, Ksenija _______________________________ Ksenija Gasic, Ph.D. Assistant Professor, Peach Breeding and Genetics School of Agricultural, Forest, & Environmental Sciences Clemson University _______________________________ Ksenija Gasic, Ph.D. Assistant Professor, Peach Breeding and Genetics School of Agricultural, Forest, & Environmental Sciences Clemson University

12 years, 11 months

Pre-publication release of four Rosaceae Genomes

by Dhingra, Amit

Dear Colleagues: The draft genome assemblies of double haploid apple (Malus x domestica cv. "Golden Delicious"), double haploid pear (Pyrus communis cv "Doyenne du Comice"), sweet cherry (Prunus avium cv "Stella") and almond (Pyrus amygdalus - 2 selections S3067 and Lauranne) are being made available to the research community prior to publication via our Genome Portal http://genomicsdata.wsu.edu/public_access/index.php The data may be downloaded and used by those who agree to the terms of release. The information should not be further re-distributed or publicly released. If you wish for someone in your laboratory to use the data, they must all read and agree to the access terms as defined on the portal. Please access the terms of agreement and set up a new account at http://genomicsdata.wsu.edu/public_access/index.php?r=site/newaccount We welcome community members to collaborate in the ongoing efforts on genome analysis and contribute to the manuscripts under preparation. You can indicate your areas of interest on the new account sign up page. It is expected that scientists who access these data, will not trespass on the consortia members' ongoing efforts to analyze and publish a whole genome analysis of the afore-listed genomes. Further anyone who accesses these data will agree not to publish whole-genome or whole chromosome scale analyses of the afore-listed genomes, analyses of gene families/genome structures/ repetitive sequences, comparative analyses with other organisms including other published plant genomes, or other analyses such that they encroach and limit our opportunity to publish the findings of our work. We would like to gratefully acknowledge the support received from our respective Universities, Institutions, Federal, State and Commodity funding sources that made this work possible. Please see the attached document for details regarding consortia members and funding support. On behalf of DH Apple, Comice Pear, Sweet Cherry and Almond Genome project consortia, Sincerely, Amit Amit Dhingra, Ph.D. Associate Professor Genomics and Biotechnology Department of Horticulture Molecular Plant Sciences Graduate Program PO Box 646414, 155 Johnson Hall Pullman, WA 99164-6414 Phone: (509) 335-3625; Cell: (509) 432-3683 Fax: (509) 335-8690; Email: adhingra(a)wsu.edu<mailto:adhingra@wsu.edu> www.genomics.wsu.edu<http://www.genomics.wsu.edu/>

13 years, 2 months

Peach specialist position at Clemson University

by Ksenija Gasic

New job vacancy at Clemson University, see attachment. Ksenija Gasic, Ph.D. Assistant Professor Peach breeding and genetics School of Agricultural, Forest, and Environmental Sciences Clemson University 112 Biosystems Research Complex 105 Collings St. Clemson SC 29634 USA Express Mail/Package Delivery: Poole&Ag. Ctr., E-143/50 Cherry Rd Clemson SC 29634-0001 TEL: 864.656.3664 FAX: 864.656.4960 CELL: 864.723.2009 e-mail: kgasic(a)clemson.edu<mailto:kgasic@clemson.edu>

13 years, 3 months

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