GDR-LIST

gdr-list@bioinfo.wsu.edu

328 discussions

by Ksenija Gasic

Dear Colleagues, Clemson University is hiring an Assistant Professor of Pomology. It is a tenure track faculty position located in Clemson on main campus. I would appreciate if you would show it to potential candidates and encourage them to apply. The position description is attached and it is also available at the following link (https://cubshr9e.clemson.edu/psc/hpprd/EMPLOYEE/HRMS/c/HRS_HRAM.HRS_CE.GBL?&) job ID 12746. The deadline for application is October 15th or until suitable candidate is found. I apologize if you receive this message several times. Thank you very much, Ksenija _______________________________ Ksenija Gasic, Ph.D. Assistant Professor, Peach Breeding and Genetics School of Agricultural, Forest, & Environmental Sciences Clemson University _______________________________ Ksenija Gasic, Ph.D. Assistant Professor, Peach Breeding and Genetics School of Agricultural, Forest, & Environmental Sciences Clemson University

11 years, 9 months

Pre-publication release of four Rosaceae Genomes

by Dhingra, Amit

Dear Colleagues: The draft genome assemblies of double haploid apple (Malus x domestica cv. "Golden Delicious"), double haploid pear (Pyrus communis cv "Doyenne du Comice"), sweet cherry (Prunus avium cv "Stella") and almond (Pyrus amygdalus - 2 selections S3067 and Lauranne) are being made available to the research community prior to publication via our Genome Portal http://genomicsdata.wsu.edu/public_access/index.php The data may be downloaded and used by those who agree to the terms of release. The information should not be further re-distributed or publicly released. If you wish for someone in your laboratory to use the data, they must all read and agree to the access terms as defined on the portal. Please access the terms of agreement and set up a new account at http://genomicsdata.wsu.edu/public_access/index.php?r=site/newaccount We welcome community members to collaborate in the ongoing efforts on genome analysis and contribute to the manuscripts under preparation. You can indicate your areas of interest on the new account sign up page. It is expected that scientists who access these data, will not trespass on the consortia members' ongoing efforts to analyze and publish a whole genome analysis of the afore-listed genomes. Further anyone who accesses these data will agree not to publish whole-genome or whole chromosome scale analyses of the afore-listed genomes, analyses of gene families/genome structures/ repetitive sequences, comparative analyses with other organisms including other published plant genomes, or other analyses such that they encroach and limit our opportunity to publish the findings of our work. We would like to gratefully acknowledge the support received from our respective Universities, Institutions, Federal, State and Commodity funding sources that made this work possible. Please see the attached document for details regarding consortia members and funding support. On behalf of DH Apple, Comice Pear, Sweet Cherry and Almond Genome project consortia, Sincerely, Amit Amit Dhingra, Ph.D. Associate Professor Genomics and Biotechnology Department of Horticulture Molecular Plant Sciences Graduate Program PO Box 646414, 155 Johnson Hall Pullman, WA 99164-6414 Phone: (509) 335-3625; Cell: (509) 432-3683 Fax: (509) 335-8690; Email: adhingra(a)wsu.edu<mailto:adhingra@wsu.edu> www.genomics.wsu.edu<http://www.genomics.wsu.edu/>

11 years, 12 months

Peach specialist position at Clemson University

by Ksenija Gasic

New job vacancy at Clemson University, see attachment. Ksenija Gasic, Ph.D. Assistant Professor Peach breeding and genetics School of Agricultural, Forest, and Environmental Sciences Clemson University 112 Biosystems Research Complex 105 Collings St. Clemson SC 29634 USA Express Mail/Package Delivery: Poole&Ag. Ctr., E-143/50 Cherry Rd Clemson SC 29634-0001 TEL: 864.656.3664 FAX: 864.656.4960 CELL: 864.723.2009 e-mail: kgasic(a)clemson.edu<mailto:kgasic@clemson.edu>

12 years, 1 month

Jobs at EMR

by Felicidad Fernandez (EMR)

Follow link to see new job vacancies at East Malling Research http://www.emr.ac.uk/jobs.htm --East Malling Research registered office: New Road, East Malling, Kent ME19 6BJ. Tel. 01732-843833. Registered in England No. 5019373. Charity registration No.1102243. The information in this E-Mail and any attachments is confidential, may be legally privileged and is intended to be for the use of the intended recipient/s. If you are not the recipient named above please be aware that any disclosure, copying, distribution or use of the contents of this information is prohibited and may not represent the views of EMR. Activity and use of the East Malling Research E-mail system and any communications using it are monitored to secure its effective operation and for other lawful business purposes.

12 years, 1 month

peach genome published in Nature Genetics

by Main, Doreen

Congratulations to Ignazio Verde and the other members of the International Peach Genome Consortium for the recent release of the peach genome in Nature Genetics. Verde et al., (2013) The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution. Nature Genetics . doi:10.1038/ng.2586<http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.2586.html> The peach genome and associated genomics, genetics and breeding data may be accessed on GDR (www.rosaceae.org<http://www.rosaceae.org>) Cheers Dorrie Dorrie Main, Ph.D. Associate Professor of Bioinformatics Department of Horticulture Washington State University 45 Johnson Hall Pullman, WA 99164-6414 Tel: 509-335-2774 Email: dorrie(a)wsu.edu URL: www.bioinfo.wsu.edu

12 years, 2 months

FW: PhD Studentship

by Felicidad Fernandez (EMR)

PhD opportunity. Host jump genetics- the mechanisms of pathogen adaptation in Pseudomonas Supervisors- Dr Robert W. Jackson (Reading), Dr Richard Harrison and Dr Laura Lewis (East Malling Research) The mechanism by which pathogens cross species barriers to infect a new host is poorly understood, making the movements of host-jumping pathogens extremely unpredictable. The project offered here will focus on Pseudomonas syringae pathovars, which have made several known host-jumps across economically important crops, including wheat, beans, plum and cherry. The aims of this project are as follows: 1. To sequence the genomes of several Pseudomonas syringae pathovars to assess within and between pathovar diversification in relation to host jump events. 2. To address the hypothesis of whether effectors dictate host specificity and to assess their centrality to host jumping. 3. To initiate a host jump within the laboratory setting and in so doing identify potential causes of host jumping at the molecular level. 4. To link pathogen effectors to resistance relationships in planta to assess whether host-jumping to a new host is modulated by host resistance in the existing host. The project will use next generation sequencing to sequence the genomes of several pathovars of the plant pathogenic species, and will employ comparative genomics to assess the relationship between effector genes, which are required for virulence, and host jumping events. Molecular techniques will be used to recreate host jumps within the laboratory, which will inform us of the driving forces that bring about host jumps, enabling better predictions of which strains are likely to host jump, and which hosts are they likely to jump to. The student will receive training in genomics and genetics, bioinformatics, plant-microbe interactions, and evolution. The supervisory team are starting a new strategic partnership between Reading and East Malling drawing upon resources in both institutions. The team will collaborate with key scientists in each institute; for example, Dr Louise Johnson will provide valuable advice for the evolutionary experiments. Eligibility: Applicants should hold a minimum of a UK Honours Degree at 2:1 level or equivalent in a relevant subject. Please note that due to restrictions on the funding this studentship is for UK/EU applicants only. How to apply: To apply for this studentship please submit an application for a PhD in Molecular Plant Pathology to the University - see http://www.reading.ac.uk/graduateschool/prospectivestudents/gs-how-to-apply… Application Deadline: Friday 15th March 2013 Further Enquiries: Please contact Dr Robert Jackson (r.w.jackson(a)reading.ac.uk) and Dr Richard Harrison (Richard.Harrison(a)emr.ac.uk) Funding Notes: Funding Details: Studentship will cover Home/EU Fees and pay the Research Council minimum stipend (£13,590 for 2011/12) for up to 3 years. The studentship will begin in October 2013. --East Malling Research registered office: New Road, East Malling, Kent ME19 6BJ. Tel. 01732-843833. Registered in England No. 5019373. Charity registration No.1102243. The information in this E-Mail and any attachments is confidential, may be legally privileged and is intended to be for the use of the intended recipient/s. If you are not the recipient named above please be aware that any disclosure, copying, distribution or use of the contents of this information is prohibited and may not represent the views of EMR. Activity and use of the East Malling Research E-mail system and any communications using it are monitored to secure its effective operation and for other lawful business purposes.

12 years, 3 months

Fruit and Roots: a celebration and forward look - second call - note date change

by Felicidad Fernandez (EMR)

Dear all, Find attached the second announcement of EMR centenary conference. Please note the change of dates and see below the link for on-line registration: http://www.aab.org.uk/contentok.php?id=148&basket=wwsshowconfregister I hope to see at East Malling, Feli Felicidad Fernández Fernández |Plant Breeder and Molecular Geneticist Genetics and Crop Improvement Programme East Malling Research | New Road, East Malling, Kent, ME19 6BJ * felicidad.fernandez(a)emr.ac.uk ' +44 (0) 1732 523739 È +44 (0) 7910 657970 7 +44 (0) 1732 849067 --East Malling Research registered office: New Road, East Malling, Kent ME19 6BJ. Tel. 01732-843833. Registered in England No. 5019373. Charity registration No.1102243. The information in this E-Mail and any attachments is confidential, may be legally privileged and is intended to be for the use of the intended recipient/s. If you are not the recipient named above please be aware that any disclosure, copying, distribution or use of the contents of this information is prohibited and may not represent the views of EMR. Activity and use of the East Malling Research E-mail system and any communications using it are monitored to secure its effective operation and for other lawful business purposes.

12 years, 4 months

REMINDER: RosEXEC ELECTIONS UNDERWAY

by Dardick, Chris

Dear Rosaceae Community Member: The 2013 RosEXEC elections are underway and I want to Thank all of those who have already voted. If you have not voted yet, this is the last week to do so. Please vote by Friday, Dec 14th. The electronic ballot instructions are below. Thank you for your continued support of RosEXEC. VOTING INSTRUCTIONS: We are ready to vote on the 2013 candidates for RosEXEC. Voting begins 28 Nov. and ends 14 Dec. Please go to the following web site to fill out your electronic ballot. You can learn more about any candidates' background and vision for RosEXEC by clicking on their name. http://www.rosaceae.org/bio/content/?title=&url=/cgi-bin/gdr/gdr_rosexec_me… The community will elect five new U.S. members and two new International members to a 3-year term. U.S.-based members will vote for both U.S. candidates and International candidates. International community members will vote for International candidates only. This year's slate is diverse. We encourage you to consider voting to create a leadership group that will appropriately represent the amazing diversity of the Rosaceae community. Current RosEXEC membership can be found at http://www.rosaceae.org/node/473 As a reminder, the mission of RosEXEC is to: * Serve as a communication and coordination focal point for the U.S. Rosaceae genomics, genetics and breeding community. * Define research priorities based on input from the industry and research community. * Facilitate scientific interaction and foster dynamic research teams. * Promote research priorities. * Coordinate educational efforts from the research community to the industry and the public. Thanks again to the following U.S. and International members rotating off: U.S. International John Clark Michela Troggio Kevin Folta Thomas Debener Ksenija Gasic Amy Iezzoni Jim McFerson QUESTIONS? Please contact Chris Dardick (chris.dardick(a)ars.usda.gov<mailto:chris.dardick@ars.usda.gov>), Chair, RosEXEC membership committee. VOTE EARLY! Chris Dardick USDA, ARS Appalachian Fruit Research Station 2217 Wiltshire Road Kearneysville, WV 25430 phone: 304-725-3451 ext. 387 fax: 304-728-2340 chris.dardick(a)ars.usda.gov<mailto:chris.dardick@ars.usda.gov> Chris Dardick USDA, ARS Appalachian Fruit Research Station 2217 Wiltshire Road Kearneysville, WV 25430 phone: 304-725-3451 ext. 387 fax: 304-728-2340 chris.dardick(a)ars.usda.gov<mailto:chris.dardick@ars.usda.gov> This electronic message contains information generated by the USDA solely for the intended recipients. Any unauthorized interception of this message or the use or disclosure of the information it contains may violate the law and subject the violator to civil or criminal penalties. If you believe you have received this message in error, please notify the sender and delete the email immediately.

12 years, 4 months

RosEXEC ELECTIONS UNDERWAY

by cdardick＠comcast.net

Rosaceae Community Member: We are ready to vote on the 2013 candidates for RosEXEC. Voting begins 28 Nov. and ends 14 Dec. Please go to the following web site to fill out your electronic ballot. You can learn more about any candidates’ background and vision for RosEXEC by clicking on their name. http://www.rosaceae.org/bio/content/?title=&url=/cgi-bin/gdr/gdr_rosexec_me… The community will elect five new U.S. members and two new International members to a 3-year term. U.S.-based members will vote for both U.S. candidates and International candidates. International community members will vote for International candidates only. This year’s slate is diverse. We encourage you to consider voting to create a leadership group that will appropriately represent the amazing diversity of the Rosaceae community. Current RosEXEC membership can be found at http://www.rosaceae.org/node/473 As a reminder, the mission of RosEXEC is to: · Serve as a communication and coordination focal point for the U.S. Rosaceae genomics, genetics and breeding community. · Define research priorities based on input from the industry and research community. · Facilitate scientific interaction and foster dynamic research teams. · Promote research priorities. · Coordinate educational efforts from the research community to the industry and the public. Thanks again to the following U.S. and International members rotating off: U.S. International John Clark Michela Troggio Kevin Folta Thomas Debener Ksenija Gasic Amy Iezzoni Jim McFerson QUESTIONS? Please contact Chris Dardick ( chris.dardick(a)ars.usda.gov ), Chair, RosEXEC membership committee. VOTE EARLY! Chris Dardick USDA, ARS Appalachian Fruit Research Station 2217 Wiltshire Road Kearneysville, WV 25430 phone: 304-725-3451 ext. 387 fax: 304-728-2340 chris.dardick(a)ars.usda.gov

12 years, 6 months

Employment Opportunity: Lecturer/Senior Lecturer in Horticultural Production at Massey University, NZ

by Main, Doreen

http://jobs.massey.ac.nz/PositionDetail.aspx?p=7574

12 years, 7 months

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