We will be having a U.S. RosEXEC meeting at PAG, 2015, scheduled for the Stratford Room at the Town and Country Hotel, Sunday Jan 11, 2015 from 8-10 am. This will be followed by the RosIGI meeting from 10-11 am (chaired by Dorrie Main) in the same room. As members of the Rosaceae community, you are invited to join us.
If you are unable to attend the meetings, Dorrie Main will make both the RosEXEC and RosIGI meetings available via Skype. Her address is dorrie.s.main
For more information about U.S. RosEXEC and RosIGI, please see the following websites:
http://www.rosaceae.org/community/us_rosexechttp://www.rosaceae.org/community/rosgi
Gayle Volk (soon-to-be RosEXEC Chair)
USDA-ARS-NCGRP
1111 S. Mason St.
Fort Collins, CO 80521
970-495-3205
This electronic message contains information generated by the USDA solely for the intended recipients. Any unauthorized interception of this message or the use or disclosure of the information it contains may violate the law and subject the violator to civil or criminal penalties. If you believe you have received this message in error, please notify the sender and delete the email immediately.
Postdoc Opportunities in U.S. with RosBREED Project
Application window is closing at Christmas!
We are seeking postdoctoral associates for key positions in the newly funded RosBREED project (www.rosbreed.org). RosBREED is a U.S-wide collaboration among breeders, geneticists, physiologists, pathologists, and socio-economists of Rosaceae crops. This project seeks to develop and apply modern DNA-based diagnostic tools to help deliver new cultivars with superior horticultural quality and disease resistance.
We are seeking two postdocs to begin 1 January 2015. The Prunus Postdoc will be based at Clemson University under the guidance of Dr. Ksenija Gasic and will focus on Prunus crops, primarily peach but not cherry. The Apple & Cherry Postdoc will be based at Washington State University under the guidance of Dr. Cameron Peace and will focus on apple, sweet cherry, and tart cherry. A third postdoc focusing on strawberry, blackberry, rose, and pear will later be sought to begin from 1 September 2015, to be based at USDA-Corvallis. All positions are funded through to 31 August 2019 - i.e., at least four years.
Activities: All postdocs will conduct genetic research in QTL discovery, DNA test development both locus-specific and genome-wide, and applied marker-assisted breeding (MAB). These research associates will be the primary liaisons helping U.S. Rosaceae crop breeders to convert new DNA information and other project advances into breeding impact, using cutting-edge technologies, software, and knowledge. Two six-month internships with project partners outside the U.S. (e.g., in Europe, New Zealand, & Australia) are expected for each postdoc during the project's duration.
Qualifications: Active research communication is expected in the form of scientific publications, extension articles, participation in conferences and project meetings, and networking across breeding programs and allied science programs both U.S-wide and internationally. Applicants must have a Ph.D. in Plant Breeding, Horticultural Genetics, or a closely related field. The successful candidate will be a highly motivated team player with excellent communication skills and extensive experience in statistical genetics and linkage analysis. Preference will be given to candidates with evidence of successful management of large datasets, substantial research productivity, a strong publication record, experience with perennial, clonally propagated crop genetics, and a commitment to practical application. Familiarity with Rosaceae crop breeding germplasm and Pedigree-Based Analysis software are also advantageous.
Applying: If you are interested in the Prunus Postdoc or the Apple & Cherry Postdoc position, please email a cover letter highlighting your qualifications, your current CV, copies of graduate degree transcripts, and contact information (phone number and email address) of three referees to either:
Prunus: Dr. Ksenija Gasic at kgasic(a)clemson.edu
or
Apple & Cherry: Dr. Cameron Peace at cpeace(a)wsu.edu
Please direct questions on either position to the same email addresses.
Consideration of applications will begin immediately and will continue until the positions are filled.
Dear All,
Please see the message from Dr. Ariel Lopez below about the Special Issue
on New approaches to fruit tree transcriptome analysis.
Thanks!
Sook
--------------------------
*Special Issue on New approaches to fruit tree transcriptome analysis*
Dear Sook:
I would appreciate your help on disseminating the information at GDR
regarding an special issue on “new approaches to fruit tree transcriptome
analyses”. This is part of a Research Topic from Frontiers in Plant
Science. I would like to encourage the members of the Rosaceae community to
consider the submission of manuscripts on this topic. Further information
can be found at the following link
http://journal.frontiersin.org/ResearchTopic/3325#impact
Thanks!
Best wishes
Ariel
------------------------------------------
Sook Jung, PhD
Assistant Research Professor of Bioinformatics
Dept of Horticulture
Washington State University
45 Johnson Hall, Pullman, WA 99164-6414
Email: sook_jung(a)wsu.edu
-------------------------------------------
Follow GDR on Twitter!
<https://twitter.com/GDR_news>
*Two postdoc opportunities to study tree architecture at Cornell
University, Geneva, NY and at the USDA ARS Appalachian Fruit Research
Station, Kearneysville, WV *
We are seeking two postdoctoral scientists to study molecular and genetic
aspects of tree architecture as part of a project newly funded by NSF Plant
Genome Research Program. The aims of this project are to uncover the
molecular mechanisms underlying a phenomenon called apical control that
regulates tree structures. Both positions will be hired through Cornell
University and are anticipated to begin as early as February 2015 and are
funded for a period of at least 3 years. A postdoc specializing in apple
will be based at Cornell University, Geneva, NY under the guidance of Dr.
Kenong Xu. A postdoc specializing in Prunus species (peach and plum) will
be based at the USDA ARS Appalachian Fruit Research Station, Kearneysville
WV under the guidance of Dr. Chris Dardick.
The postdocs will conduct genetic analyses to identify causative genes
responsible for mutant growth habits, perform yeast two-hybrid screens,
create transgenic apple or Prunus knock-down and over-expression lines, and
carry out image-based phenotyping and transcriptional profiling studies of
wild type and mutant apple or Prunus meristems. As part of the research
program, both postdocs will be expected to interact with the entire
research team as well as with growers and industry leaders to communicate
the practical applications of their findings.
Successful candidates should have a background in plant development and be
skilled in molecular techniques. Specific experience in horticultural crops
is desired but not necessary as candidates with complementary experience in
model plant systems are strongly encouraged to apply. Candidates should be
able to work independently, devise appropriate hypotheses and experiments,
and learn new skills as appropriate. Strong writing and communication
skills are also required. Applicants must have a Ph.D. in plant genetics,
molecular biology, development, or a related field. Qualified minority
candidates are strongly encouraged to apply.
Applying: Interested applicants should send a cover letter highlighting
your qualifications and research interests, your current CV, copies of
graduate degree transcripts, and contact information for three references
to both project leaders:
Apple: Dr. Kenong Xu at kx27(a)cornell.edu and
Prunus: Dr. Chris Dardick at chris.dardick(a)ars.usda.gov
Review of applications will begin at the time they are received and will
continue until both positions are filled.
Employment information can be accessed at
http://www.rosaceae.org/community/employment
------------------------------------------
Sook Jung, PhD
Assistant Research Professor of Bioinformatics
Dept of Horticulture
Washington State University
45 Johnson Hall, Pullman, WA 99164-6414
Email: sook_jung(a)wsu.edu
-------------------------------------------
Follow GDR on Twitter!
<https://twitter.com/GDR_news>
Postdoc Opportunities in U.S. with RosBREED Project
We are seeking postdoctoral associates for key positions in the newly funded RosBREED project (www.rosbreed.org). RosBREED is a U.S-wide collaboration among breeders, geneticists, physiologists, pathologists, and socio-economists of Rosaceae crops. This project seeks to develop and apply modern DNA-based diagnostic tools to help deliver new cultivars with superior horticultural quality and disease resistance.
We are seeking two postdocs to begin 1 January 2015. The Prunus Postdoc will be based at Clemson University under the guidance of Dr. Ksenija Gasic and will focus on Prunus crops, primarily peach but not cherry. The Apple & Cherry Postdoc will be based at Washington State University under the guidance of Dr. Cameron Peace and will focus on apple, sweet cherry, and tart cherry. A third postdoc focusing on strawberry, blackberry, rose, and pear will later be sought to begin from 1 September 2015, to be based at USDA-Corvallis. All positions are funded through to 31 August 2019 - i.e., at least four years.
Activities: All postdocs will conduct genetic research in QTL discovery, DNA test development both locus-specific and genome-wide, and applied marker-assisted breeding (MAB). These research associates will be the primary liaisons helping U.S. Rosaceae crop breeders to convert new DNA information and other project advances into breeding impact, using cutting-edge technologies, software, and knowledge. Two six-month internships with project partners outside the U.S. (e.g., in Europe, New Zealand, & Australia) are expected for each postdoc during the project's duration.
Qualifications: Active research communication is expected in the form of scientific publications, extension articles, participation in conferences and project meetings, and networking across breeding programs and allied science programs both U.S-wide and internationally. Applicants must have a Ph.D. in Plant Breeding, Horticultural Genetics, or a closely related field. The successful candidate will be a highly motivated team player with excellent communication skills and extensive experience in statistical genetics and linkage analysis. Preference will be given to candidates with evidence of successful management of large datasets, substantial research productivity, a strong publication record, experience with perennial, clonally propagated crop genetics, and a commitment to practical application. Familiarity with Rosaceae crop breeding germplasm and Pedigree-Based Analysis software are also advantageous.
Applying: If you are interested in the Prunus Postdoc or the Apple & Cherry Postdoc position, please email a cover letter highlighting your qualifications, your current CV, copies of graduate degree transcripts, and contact information (phone number and email address) of three referees to either:
Prunus: Dr. Ksenija Gasic at kgasic(a)clemson.edu
or
Apple & Cherry: Dr. Cameron Peace at cpeace(a)wsu.edu
Please direct questions on either position to the same email addresses.
Consideration of applications will begin immediately and will continue until the positions are filled.
We are seeking US and international scientist nominations for the 2015-2017 term of RosEXEC members.
The RosEXEC mission is as follows:
· Serve as a communication and coordination focal point for the US Rosaceae genomics, genetics and breeding community.
· Define research priorities based on input from the industry and research community.
· Facilitate scientific interaction and foster dynamic research teams.
· Promote research priorities.
· Coordinate educational efforts from the research community to the industry and the public.
· Serve as an official steering committee for the Genome Database for Rosaceae
The committee seeks to have a diverse representation of scientists from industry, university, and government as well as pome, stone, and rosoid crop groups. Self-nominations are welcome, as are nominations of colleagues in the Rosaceae community. The committee meets annually at the Plant and Animal Genome Conference, and several conference calls are held throughout the year.
The current membership of RosEXEC can be viewed at: http://www.rosaceae.org/rosexec_2014
And the RosEXEC page is: http://www.rosaceae.org/community/us_rosexec
Five members (Chris Dardick, David Byrne, Thomas Chao, Bob Curtis, and Sook Jung) will be rotating off the committee in January 2015, so five US slots will be filled. International representatives Dan Sargent and Felicidad Fernandez are rotating off the committee, so two international slots will be filled. Scientists rotating off the RosEXEC committee are not eligible for re-nomination for one year.
To submit a nomination, please submit
1) a short biography
2) picture
3) e-mail address
4) mailing address
to RosEXEC Vice-Chair Gayle Volk (Gayle.Volk(a)ars.usda.gov<mailto:Gayle.Volk@ars.usda.gov>) by November 21, 2014.
Elections will be held in December 2014 and new members will begin their assignments at the RosExec meeting to be held at the Plant and Animal Genome Meeting (PAG) in January, 2015.
If you have questions, please do not hesitate to contact me. Thank you for your participation.
Gayle Volk
National Center for Genetic Resources Preservation
USDA-ARS
1111 S. Mason Street
Fort Collins, CO 80521
970-495-3205
This electronic message contains information generated by the USDA solely for the intended recipients. Any unauthorized interception of this message or the use or disclosure of the information it contains may violate the law and subject the violator to civil or criminal penalties. If you believe you have received this message in error, please notify the sender and delete the email immediately.
Hi Folks,
Just wanted to let you know that GDR has been funded for the next 5 to 10 years by the USDA NIFA Specialty Crop Research Program. We are also receiving funds for the next 5 to 10 years to further develop the Tripal database platform that GDR uses and this will further help us deliver a sustainable database that we hope meets the communities short and long term needs. To help ensure this the US Rosaceae Genomics, Genetics and Breeding Executive Committee, known as RosEXEC (which contains non US international liaisons) has kindly agreed to serve as the GDR steering committee. We will present quarterly progress reports to them, together with planned activities for the next quarter and receive feedback from them. Our plans for the next 5 years will be posted on GDR in the next couple of weeks and we will start issuing quarterly newsletters to the GDR mailing list.
Thank you for your tremendous support over the last 12 years of GDR, clearly we could not do this without you. Here is to the next ten years of GDR development.
Cheers
Dorrie, Sook, and the rest of the GDR development team
Dorrie Main, PhD
Associate Professor of Bioinformatics
Department of Horticulture
Washington State University
45 Johnson Hall
Pullman, WA 99164-6414
Tel: 509-335-2774 (office)
Email: dorrie(a)wsu.edu<mailto:dorrie@wsu.edu>
URL: www.bioinfo.wsu.edu<http://www.bioinfo.wsu.edu/>
Hello everyone,
First I apologize if you get this email twice. I have sent it to the GDR mailing list and the conference attendee list.
All of the abstracts from RGC7 have been made public. Some abstracts, also have a poster PDF or presentation recording associated with them (with permission from authors). To access the abstracts, got to http://www.rosaceae.org/conferences/rgc7. There are quick links on the left to the abstract list (click on abstract title to see complete info) and a link on how to cite the abstracts. On the conference home page, there are links to a PDF of the abstract book and Dr. Rex Bernardo's wonderful keynote address.
Thanks again to all of you who attended and were involved in the planning of the conference. It went really well. Plan to attend RGC8 in France in 2016!
Jodi
Jodi Humann, Ph.D.
Main Lab Bioinformatics Project Coordinator
Department of Horticulture
Washington State University
PO Box 646414
Pullman, WA 99164-6414
509-335-3206
jhumann(a)wsu.edu
Hi Folks,
If you have RNA Seq data for peach or prunus that you would like to share with Ignazio verde to help annotate the v2.0 peach genome, please email him at ignazio.verde(a)entecra.it
Thanks
Dorrie
Dorrie Main, PhD
Associate Professor of Bioinformatics
Department of Horticulture
Washington State University
45 Johnson Hall
Pullman, WA 99164-6414
Tel: 509-335-2774 (office)
Email: dorrie(a)wsu.edu<mailto:dorrie@wsu.edu>
URL: www.bioinfo.wsu.edu<http://www.bioinfo.wsu.edu/>
Hi all,
Please forward to all and any interested parties.
I currently have a post doctoral position available in my lab. Currently it is set for a one year (with the possibility of renewal for a total of two years)
It is a teaching postdoc where the incumbent will teach a class per semester (as teacher of record), and will work with my undergraduate students on my RI INBRE (NIH) based project working on the molecular mechanisms underling the effects of Raspberry Phenolics on human stomach cancer cells. The Postdoc will need to be willing to train students in qPCR, and work with NGS data. Some human cell culture will be required, but extensive training will be provided through my collaborators lab at Brown University. Some work on grant, and manuscript preparation will also be required.
This is a position that is ideal for a post-doc wanting to perdure a career as a faculty member at a primarily undergraduate university. Not to mention Newport RI is a WONDERFUL place to live.
The one trick is that I need to fill this position quickly, so please send CV’s to me directly as soon as possible (jd.swanson(a)salve.edu). I will be reviewing immediately until the position is filled.
Thanks
JD
JD Swanson, Ph.D.
Assoc. Professor of Biology and Class Dean
Department of Biology and Biomedical Sciences
Salve Regina University
100 Ochre Point Ave
Newport RI 02840
Ph) 401-341-3165
jd.swanson(a)salve.edu
http://Swanson.salvereginablogs.com
To book an appointment please go to
http://swansonjd.youcanbookme.com
