GDR-LIST

gdr-list@bioinfo.wsu.edu

1 participants
332 discussions

by Main, Doreen

Hi Folks, If you have transcriptome data for any of the Rosaceae species that you would like housed in GDR could you please contact us. Although reads are available in the NCBI SRA, access to the assemblies are not available and these are valuable resources we should make available if possible. Full credit will be given on GDR to data contributors. Many Thanks Dorrie Dorrie Main, PhD Associate Professor of Bioinformatics Department of Horticulture Washington State University 45 Johnson Hall Pullman, WA 99164-6414 Tel: 509-335-2774 (office) Email: dorrie(a)wsu.edu<mailto:dorrie@wsu.edu> URL: www.bioinfo.wsu.edu<http://www.bioinfo.wsu.edu/>

12 years

RGC7 registration and abstract submission open

by Humann, Jodi Lynn

Registration and abstract submission for the 7th International Rosaceae Genomics Conference is now open. The conference website, http://www.rosaceae.org/conferences/rgc7, has links for registration and abstract submission as well as information on the negotiated hotel room rate. We will have the costs for the pre- and post-tours soon. If you have any questions about the conference or have problems registering or submitting an abstract, please email us at rgc7(a)rosaceae.org<mailto:rgc7@rosaceae.org>. We look forward to seeing you in Seattle in 2014!

12 years

Remove

by Marvin Brown

Please remove from your email lists !! Thank you !!

12 years

Reminder: Rapid Cycle Crop Breeding (RCCB) conference to be held Jan 7-10, near Washington, D.C.

by Dardick, Chris

Reminder: Rapid Cycle Crop Breeding (RCCB) conference to be held Jan 7-10, near Washington, D.C. Please note that the abstract and early registration deadlines have been extended to December 1st after which walk-in registration rates will apply. On behalf of our organizing committee, we would like to invite all of you to the 1st international conference on Rapid Cycle Crop Breeding (RCCB) which will be held January 7 through the 10th, 2014 (the week prior to Plant and Animal Genome) just outside of Washington DC (Landsdowne, VA). There will be four aspects covered; practical breeding systems, science of shortened juvenility, regulatory aspects concerning novel transgenic crops, and a workshop on how to talk about biotechnology to the public. Invited speakers include: Bert Abbott, Sue Gardner, Pace Lubinsky, Magda-Viola Hanke, Leandro Pena, Steve Strauss and Ralph Scorza. Further information is on our website including how to register: http://www.ars.usda.gov/SP2UserFiles/Place/19310505/RCCB%20Conference.docx Submitted abstracts to rapidcyclecropbreeding(a)yahoo.com<mailto:rapidcyclecropbreeding@yahoo.com> will be considered for presentations. Attached is an information sheet with all the details on registration, location and agenda. If further information is needed, please feel free to contact Ralph Scorza, ralph.scorza(a)ars.usda.gov<mailto:ralph.scorza@ars.usda.gov>. Also attached is a flyer for the conference. Chris Dardick Chris Dardick Plant Molecular Biologist/Pathologist USDA ARS Appalachian Fruit Research Station 2217 Wiltshire Road Kearneysville, WV 25430 Office: 304-725-3451 ext. 387 Cell: 304-991-9528 Chris.dardick(a)ars.usda.gov<mailto:Chris.dardick@ars.usda.gov> Chris Dardick Plant Molecular Biologist/Pathologist USDA ARS Appalachian Fruit Research Station 2217 Wiltshire Road Kearneysville, WV 25430 Office: 304-725-3451 ext. 387 Cell: 304-991-9528 Chris.dardick(a)ars.usda.gov<mailto:Chris.dardick@ars.usda.gov> This electronic message contains information generated by the USDA solely for the intended recipients. Any unauthorized interception of this message or the use or disclosure of the information it contains may violate the law and subject the violator to civil or criminal penalties. If you believe you have received this message in error, please notify the sender and delete the email immediately.

12 years

Job Position open at Salve Regina University

by John-David Swanson

Hi all, This may not apply to many of you directly but you may have colleagues, or know of graduate students who are close to graduating in this field that you could encourage to apply. Salve currently has a Tenure-Track position open for an Animal Physiologist/Biologist, in particular we are most interested in an invert person who can work with marine organisms, in addition, if they look at either the behavior or neuro aspects it would be a plus. They would have a strong interest in working with Undergraduate students. Salve is a great place to work, and the department is very close and works very well together. The students are bright and work hard. There are also opportunities for funding through either the RI EPSCoR programs, or through RI INBRE. Not to mention living in Newport RI which is a certainly a perk! I have attached the job description below, if you know of anyone who could fit this description and be on the job market right now, please encourage them to apply, or contact me if they need any further information. Thanks all! JD JD Swanson, Ph.D. Asst. Professor of Biology and Class Dean Department of Biology and Biomedical Sciences Salve Regina University 100 Ochre Point Ave Newport RI 02840 Ph) 401-341-3165 jd.swanson(a)salve.edu http://Swanson.salvereginablogs.com To book an appointment please go to http://swansonjd.youcanbookme.com Salve Regina University - Asst or Assoc Professor in Biology/Physiology Thank you for considering Salve Regina University in your search. Category: Academic / Faculty Department: Biology Locations: Newport, RI Posted: Oct 23, '13 Type: Full-time E-mail to a friend<https://www.interviewexchange.com/sendemail.jsp?JOBID=43831> About Salve Regina University: Salve Regina University, ranked among the best institutions of higher education in the United States by U.S. News & World Report, is a Catholic Liberal Arts University located in scenic Newport, Rhode Island. Salve Regina offers challenging academic programs in a highly supportive environment and an innovative core curriculum that provides students with a solid foundation and broader perspective. The historic, 75-acre campus enrolls approximately 2,500 men and women and offers Associate, Baccalaureate, and Master's degrees, the Certificate of Advanced Graduate Study, and the Ph.D. in Humanities. Job Description: The Department of Biology and Biomedical Sciences invites applications for a tenure-track position beginning September 2014. The successful candidate will be a broadly educated animal physiologist knowledgeable in molecular, cell and in vivo techniques. Expertise with non-mammalian vertebrates or marine or freshwater invertebrates is required. Interest in neurobiology or behavior is desirable. Teaching responsibilities include participating in freshmen and sophomore level majors curriculum and non-majors courses, as well as teaching courses in the area of expertise on the advanced level. Maintaining an active research program with undergraduate students is required. Requirements: The candidate must hold an earned doctorate in Biology or in a related field. Post-doctoral experience or similar research experience is expected. The candidate will have a demonstrable record of excellence in teaching and the ability to maintain a successful research program with undergraduate majors. Additional Information: Salve Regina University offers generous benefits to eligible employees including: health and dental coverage, life insurance, long-term disability, 403B plan, tuition benefits and more. Salve Regina University is an Equal Opportunity/Affirmative Action employer. The University actively seeks diversity among its employees. Application Instructions: The candidate should supply 1) a letter of application, 2) a CV, 3) names and contact information from three references; 4) a statement of teaching philosophy and ideas for integrating new courses into our current curriculum and 5) a tentative plan for engaging our Biology majors in research and out-of-classroom activities. Candidates must apply on-line only at http://www.salve.edu/offices/hr/employment.cfm

12 years, 1 month

Last Call for nominations

by John-David Swanson

Hello everybody! Can’t believe it is November! I hope you all have had a productive fall and are ready for winter. This is a last call for nominations for this years election for RosExec. As it stands, we have a total of seven people (five from the US, and two of our international liaisons). I have received five nominations for US people and two for international Liaisons. I am in the process of contacting them and making sure they are still interested in running. Are there any other arms we can twist to get a larger pool? If so, could you let me know and I will contact them. I will have voting open mid november, in time for this years RosEXEC meeting in January. JD JD Swanson, Ph.D. Asst. Professor of Biology and Class Dean Department of Biology and Biomedical Sciences Salve Regina University 100 Ochre Point Ave Newport RI 02840 Ph) 401-341-3165 jd.swanson(a)salve.edu http://Swanson.salvereginablogs.com To book an appointment please go to http://swansonjd.youcanbookme.com

12 years, 1 month

RGC7 pre- and post-tour options interest

by Humann, Jodi Lynn

Hello everyone, We currently have several options for pre- and post-conference tours for RGC7. Descriptions for the tours can be found at http://www.rosaceae.org/conferences/rgc7/tours. We are trying to determine if there is enough interest for further planning for these pre- and post-tours in order to provide those interested with the cost for the tours. We have heard from a few people, but would like to know from more attendees which pre- and post-tours are of the most interest. By letting us know which tours you are interested in now, you will not be obligated to register for the tour. We are only gauging interest to see if there will be enough people to make these tours cost-effective. Please email which tour options you might be interested in to rgc7(a)rosacae.org<mailto:rgc7@rosacae.org> by October 31st. Thank you, Jodi Jodi Humann, Ph.D. Main Lab Bioinformatics Project Coordinator Department of Horticulture Washington State University PO Box 646414 Pullman, WA 99164-6414 509-335-3206 jhumann(a)wsu.edu

12 years, 2 months

Elections for 2014 RosExec

by John-David Swanson

Hello everybody! I hope you all had a wonderful and productive summer and are all ready for the fall to start! It is now time to start thinking about RosExec elections for the upcoming year. Five US people will be rotating off at the end of this year (Kate Evans, Jay Norelli, Mercey Olmstead, Janet Slovin, and Vance Whitaker). Now, looking at the numbers, we will have the following make up next year with those left: Inst: Univ 6, Gvt 4, Ind 2 Region: South 2, West 6, East 4 So we really need people from industry and/or the South to help bolster representation. We will be looking for nominations over the next few weeks. If you know of someone who may be interested in serving on RosExec, please have them contact me and I can help them, or send me their information and I can contact them. We will need a short Bio from them. I have a timeline in place as follows: Nominations to me By Oct 15, 2013 Voting will be carried out Between Nov 1-15, 2013 Secretary nominations and Election Early December Announcement of Results at PAG Once again, hope you are looking forward to your new semesters and look forward to catching up with you soon! JD JD Swanson, Ph.D. Asst. Professor of Biology and Class Dean Department of Biology and Biomedical Sciences Salve Regina University 100 Ochre Point Ave Newport RI 02840 Ph) 401-341-3165 jd.swanson(a)salve.edu http://Swanson.salvereginablogs.com To book an appointment please go to http://swansonjd.youcanbookme.com

12 years, 2 months

Re: [GDR] SNP nomenclature working group

by Bassi Daniele

Dear Dorrie can you please include also Filippo (filippo.geuna(a)unimi.it), from my Department?. He is interrsted too Regards Daniele At 07:43 02/10/2013, Main, Doreen wrote: >Content-Language: en-US >Content-Type: multipart/alternative; > >boundary="_000_60C36B140008D346BE44DBDA4D5CFD3F1BD41C55EXMB02adwsuedu_" > >Dear Rosaceae Community Members, > >As part of an effort to standardize data for inclusion in GDR we >would like to form a work group to come up with a standardized >nomenclature for SNPs. If you would be interested in participating >in this work group please let us know and we can start the process. > >Many thanks > >Dorrie > > >Dorrie Main, PhD >Associate Professor of Bioinformatics >Department of Horticulture >Washington State University >45 Johnson Hall >Pullman, WA 99164-6414 > >Tel: 509-335-2774 (office) >Email: <mailto:dorrie@wsu.edu>dorrie(a)wsu.edu >URL: <http://www.bioinfo.wsu.edu/>www.bioinfo.wsu.edu > > >_______________________________________________ >Main Bioinformatics Laboratory >GDR-LIST mailing list >GDR-LIST(a)bioinfo.wsu.edu

12 years, 2 months

SNP nomenclature working group

by Main, Doreen

Dear Rosaceae Community Members, As part of an effort to standardize data for inclusion in GDR we would like to form a work group to come up with a standardized nomenclature for SNPs. If you would be interested in participating in this work group please let us know and we can start the process. Many thanks Dorrie Dorrie Main, PhD Associate Professor of Bioinformatics Department of Horticulture Washington State University 45 Johnson Hall Pullman, WA 99164-6414 Tel: 509-335-2774 (office) Email: dorrie(a)wsu.edu<mailto:dorrie@wsu.edu> URL: www.bioinfo.wsu.edu<http://www.bioinfo.wsu.edu/>

12 years, 2 months

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GDR-LIST