GDR-LIST

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334 discussions

peach genome published in Nature Genetics

by Main, Doreen

Congratulations to Ignazio Verde and the other members of the International Peach Genome Consortium for the recent release of the peach genome in Nature Genetics. Verde et al., (2013) The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution. Nature Genetics . doi:10.1038/ng.2586<http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.2586.html> The peach genome and associated genomics, genetics and breeding data may be accessed on GDR (www.rosaceae.org<http://www.rosaceae.org>) Cheers Dorrie Dorrie Main, Ph.D. Associate Professor of Bioinformatics Department of Horticulture Washington State University 45 Johnson Hall Pullman, WA 99164-6414 Tel: 509-335-2774 Email: dorrie(a)wsu.edu URL: www.bioinfo.wsu.edu

12 years, 11 months

FW: PhD Studentship

by Felicidad Fernandez (EMR)

PhD opportunity. Host jump genetics- the mechanisms of pathogen adaptation in Pseudomonas Supervisors- Dr Robert W. Jackson (Reading), Dr Richard Harrison and Dr Laura Lewis (East Malling Research) The mechanism by which pathogens cross species barriers to infect a new host is poorly understood, making the movements of host-jumping pathogens extremely unpredictable. The project offered here will focus on Pseudomonas syringae pathovars, which have made several known host-jumps across economically important crops, including wheat, beans, plum and cherry. The aims of this project are as follows: 1. To sequence the genomes of several Pseudomonas syringae pathovars to assess within and between pathovar diversification in relation to host jump events. 2. To address the hypothesis of whether effectors dictate host specificity and to assess their centrality to host jumping. 3. To initiate a host jump within the laboratory setting and in so doing identify potential causes of host jumping at the molecular level. 4. To link pathogen effectors to resistance relationships in planta to assess whether host-jumping to a new host is modulated by host resistance in the existing host. The project will use next generation sequencing to sequence the genomes of several pathovars of the plant pathogenic species, and will employ comparative genomics to assess the relationship between effector genes, which are required for virulence, and host jumping events. Molecular techniques will be used to recreate host jumps within the laboratory, which will inform us of the driving forces that bring about host jumps, enabling better predictions of which strains are likely to host jump, and which hosts are they likely to jump to. The student will receive training in genomics and genetics, bioinformatics, plant-microbe interactions, and evolution. The supervisory team are starting a new strategic partnership between Reading and East Malling drawing upon resources in both institutions. The team will collaborate with key scientists in each institute; for example, Dr Louise Johnson will provide valuable advice for the evolutionary experiments. Eligibility: Applicants should hold a minimum of a UK Honours Degree at 2:1 level or equivalent in a relevant subject. Please note that due to restrictions on the funding this studentship is for UK/EU applicants only. How to apply: To apply for this studentship please submit an application for a PhD in Molecular Plant Pathology to the University - see http://www.reading.ac.uk/graduateschool/prospectivestudents/gs-how-to-apply… Application Deadline: Friday 15th March 2013 Further Enquiries: Please contact Dr Robert Jackson (r.w.jackson(a)reading.ac.uk) and Dr Richard Harrison (Richard.Harrison(a)emr.ac.uk) Funding Notes: Funding Details: Studentship will cover Home/EU Fees and pay the Research Council minimum stipend (£13,590 for 2011/12) for up to 3 years. The studentship will begin in October 2013. --East Malling Research registered office: New Road, East Malling, Kent ME19 6BJ. Tel. 01732-843833. Registered in England No. 5019373. Charity registration No.1102243. The information in this E-Mail and any attachments is confidential, may be legally privileged and is intended to be for the use of the intended recipient/s. If you are not the recipient named above please be aware that any disclosure, copying, distribution or use of the contents of this information is prohibited and may not represent the views of EMR. Activity and use of the East Malling Research E-mail system and any communications using it are monitored to secure its effective operation and for other lawful business purposes.

13 years, 1 month

Fruit and Roots: a celebration and forward look - second call - note date change

by Felicidad Fernandez (EMR)

Dear all, Find attached the second announcement of EMR centenary conference. Please note the change of dates and see below the link for on-line registration: http://www.aab.org.uk/contentok.php?id=148&basket=wwsshowconfregister I hope to see at East Malling, Feli Felicidad Fernández Fernández |Plant Breeder and Molecular Geneticist Genetics and Crop Improvement Programme East Malling Research | New Road, East Malling, Kent, ME19 6BJ * felicidad.fernandez(a)emr.ac.uk ' +44 (0) 1732 523739 È +44 (0) 7910 657970 7 +44 (0) 1732 849067 --East Malling Research registered office: New Road, East Malling, Kent ME19 6BJ. Tel. 01732-843833. Registered in England No. 5019373. Charity registration No.1102243. The information in this E-Mail and any attachments is confidential, may be legally privileged and is intended to be for the use of the intended recipient/s. If you are not the recipient named above please be aware that any disclosure, copying, distribution or use of the contents of this information is prohibited and may not represent the views of EMR. Activity and use of the East Malling Research E-mail system and any communications using it are monitored to secure its effective operation and for other lawful business purposes.

13 years, 1 month

REMINDER: RosEXEC ELECTIONS UNDERWAY

by Dardick, Chris

Dear Rosaceae Community Member: The 2013 RosEXEC elections are underway and I want to Thank all of those who have already voted. If you have not voted yet, this is the last week to do so. Please vote by Friday, Dec 14th. The electronic ballot instructions are below. Thank you for your continued support of RosEXEC. VOTING INSTRUCTIONS: We are ready to vote on the 2013 candidates for RosEXEC. Voting begins 28 Nov. and ends 14 Dec. Please go to the following web site to fill out your electronic ballot. You can learn more about any candidates' background and vision for RosEXEC by clicking on their name. http://www.rosaceae.org/bio/content/?title=&url=/cgi-bin/gdr/gdr_rosexec_me… The community will elect five new U.S. members and two new International members to a 3-year term. U.S.-based members will vote for both U.S. candidates and International candidates. International community members will vote for International candidates only. This year's slate is diverse. We encourage you to consider voting to create a leadership group that will appropriately represent the amazing diversity of the Rosaceae community. Current RosEXEC membership can be found at http://www.rosaceae.org/node/473 As a reminder, the mission of RosEXEC is to: * Serve as a communication and coordination focal point for the U.S. Rosaceae genomics, genetics and breeding community. * Define research priorities based on input from the industry and research community. * Facilitate scientific interaction and foster dynamic research teams. * Promote research priorities. * Coordinate educational efforts from the research community to the industry and the public. Thanks again to the following U.S. and International members rotating off: U.S. International John Clark Michela Troggio Kevin Folta Thomas Debener Ksenija Gasic Amy Iezzoni Jim McFerson QUESTIONS? Please contact Chris Dardick (chris.dardick(a)ars.usda.gov<mailto:chris.dardick@ars.usda.gov>), Chair, RosEXEC membership committee. VOTE EARLY! Chris Dardick USDA, ARS Appalachian Fruit Research Station 2217 Wiltshire Road Kearneysville, WV 25430 phone: 304-725-3451 ext. 387 fax: 304-728-2340 chris.dardick(a)ars.usda.gov<mailto:chris.dardick@ars.usda.gov> Chris Dardick USDA, ARS Appalachian Fruit Research Station 2217 Wiltshire Road Kearneysville, WV 25430 phone: 304-725-3451 ext. 387 fax: 304-728-2340 chris.dardick(a)ars.usda.gov<mailto:chris.dardick@ars.usda.gov> This electronic message contains information generated by the USDA solely for the intended recipients. Any unauthorized interception of this message or the use or disclosure of the information it contains may violate the law and subject the violator to civil or criminal penalties. If you believe you have received this message in error, please notify the sender and delete the email immediately.

13 years, 1 month

RosEXEC ELECTIONS UNDERWAY

by cdardick＠comcast.net

Rosaceae Community Member: We are ready to vote on the 2013 candidates for RosEXEC. Voting begins 28 Nov. and ends 14 Dec. Please go to the following web site to fill out your electronic ballot. You can learn more about any candidates’ background and vision for RosEXEC by clicking on their name. http://www.rosaceae.org/bio/content/?title=&url=/cgi-bin/gdr/gdr_rosexec_me… The community will elect five new U.S. members and two new International members to a 3-year term. U.S.-based members will vote for both U.S. candidates and International candidates. International community members will vote for International candidates only. This year’s slate is diverse. We encourage you to consider voting to create a leadership group that will appropriately represent the amazing diversity of the Rosaceae community. Current RosEXEC membership can be found at http://www.rosaceae.org/node/473 As a reminder, the mission of RosEXEC is to: · Serve as a communication and coordination focal point for the U.S. Rosaceae genomics, genetics and breeding community. · Define research priorities based on input from the industry and research community. · Facilitate scientific interaction and foster dynamic research teams. · Promote research priorities. · Coordinate educational efforts from the research community to the industry and the public. Thanks again to the following U.S. and International members rotating off: U.S. International John Clark Michela Troggio Kevin Folta Thomas Debener Ksenija Gasic Amy Iezzoni Jim McFerson QUESTIONS? Please contact Chris Dardick ( chris.dardick(a)ars.usda.gov ), Chair, RosEXEC membership committee. VOTE EARLY! Chris Dardick USDA, ARS Appalachian Fruit Research Station 2217 Wiltshire Road Kearneysville, WV 25430 phone: 304-725-3451 ext. 387 fax: 304-728-2340 chris.dardick(a)ars.usda.gov

13 years, 3 months

Employment Opportunity: Lecturer/Senior Lecturer in Horticultural Production at Massey University, NZ

by Main, Doreen

http://jobs.massey.ac.nz/PositionDetail.aspx?p=7574

13 years, 4 months

Bioinformatician vacancy

by Felicidad Fernandez (EMR)

http://www.emr.ac.uk/jobs.htm#BIOINFORMATICIAN --East Malling Research registered office: New Road, East Malling, Kent ME19 6BJ. Tel. 01732-843833. Registered in England No. 5019373. Charity registration No.1102243. The information in this E-Mail and any attachments is confidential, may be legally privileged and is intended to be for the use of the intended recipient/s. If you are not the recipient named above please be aware that any disclosure, copying, distribution or use of the contents of this information is prohibited and may not represent the views of EMR. Activity and use of the East Malling Research E-mail system and any communications using it are monitored to secure its effective operation and for other lawful business purposes.

13 years, 4 months

Fruits and Roots - 1st announcement and call for papers

by Felicidad Fernandez (EMR)

Dear Sir/Madam, In 2013, East Malling Research will be celebrating 100 years of plant science at this world-famous research institute - science that has shaped the way we understand and can manipulate plants to produce high value, nutritious fruit crops across the globe. To mark this Centenary, East Malling Research is working closely with colleagues at the Association of Applied Biologists (AAB) to organise a two-day international conference on 16-17 April 2013. Entitled, 'Fruit and Roots: A Celebration and Forward Look', this event has confirmed key-note speakers from New Zealand and the United States, as well as the UK. It is with pleasure that I attach a pdf of the first announcement and call for papers. We very much hope that you can circulate or inform Members of the Rosaceae group some of whom we hope will be able to participate in this event through presenting a paper/poster or attending the conference as a delegate. To mark this very special year for East Malling Research, we will be organising a number of other events and activities, and I very much hope that we can look forward to welcoming your Members here during 2013. With kind regards [Description: Description: Description: cid:image003.jpg@01CDA55D.E38AFA10] Prof. Peter J. Gregory, Chief Executive East Malling Research East Malling Research New Road East Malling Kent ME19 6BJ UK Tel: +44 (0) 1732 843833 Fax: +44 (0) 1732 849067 www.emr.ac.uk<http://www.emr.ac.uk> --East Malling Research registered office: New Road, East Malling, Kent ME19 6BJ. Tel. 01732-843833. Registered in England No. 5019373. Charity registration No.1102243. The information in this E-Mail and any attachments is confidential, may be legally privileged and is intended to be for the use of the intended recipient/s. If you are not the recipient named above please be aware that any disclosure, copying, distribution or use of the contents of this information is prohibited and may not represent the views of EMR. Activity and use of the East Malling Research E-mail system and any communications using it are monitored to secure its effective operation and for other lawful business purposes. --East Malling Research registered office: New Road, East Malling, Kent ME19 6BJ. Tel. 01732-843833. Registered in England No. 5019373. Charity registration No.1102243. The information in this E-Mail and any attachments is confidential, may be legally privileged and is intended to be for the use of the intended recipient/s. If you are not the recipient named above please be aware that any disclosure, copying, distribution or use of the contents of this information is prohibited and may not represent the views of EMR. Activity and use of the East Malling Research E-mail system and any communications using it are monitored to secure its effective operation and for other lawful business purposes.

13 years, 5 months

Correction: RosEXEC Agenda

by Norelli, Jay

The fall meeting of the US RosEXEC will take place Wednesday, October 3, NOT October 6, at the RGC6 in Mezzocorona, Italy. John (Jay) Norelli, Ph.D. Research Plant Pathologist USDA-ARS Appalachian Fruit Research Station 2217 Wiltshire Road Kearneysville, WV 25430 mailto:jay.norelli@ars.usda.gov (304) 725-3451 x264 FAX: (304) 728-2340 This electronic message contains information generated by the USDA solely for the intended recipients. Any unauthorized interception of this message or the use or disclosure of the information it contains may violate the law and subject the violator to civil or criminal penalties. If you believe you have received this message in error, please notify the sender and delete the email immediately.

13 years, 5 months

RosEXEC Agenda at RGC6

by Norelli, Jay

The fall meeting of the US RosEXEC will take place Wednesday, October 6 at the RGC6 in Mezzocorona, Italy. Meeting Agenda is attached. AGENDA RosEXEC Meeting at RGC6 (open meeting) Mezzocorona -Palarotare, Italy 15:40-16:40 Wednesday, October 3, 2012 Welcome (10 min) * Current officers, Jay Norelli, Chris Dardick, JD Swanson, and Jim McFerson, send their best wishes for an excellent meeting and regret they are unable to join you. * Ksenija Gasic, Acting Chair (KGASIC(a)clemson.edu<mailto:KGASIC@clemson.edu>) * Nahla Bassil, Acting Secretary (nahla.bassil(a)ars.usda.gov))<mailto:(nahla.bassil@ars.usda.gov))> * Self-introductions and sign-up sheet * Mission * Serve as a communication and coordination focal point for the US Rosaceae genomics, genetics and breeding community * Define and promote research priorities based on input from the industry and research community * Facilitate scientific interaction and foster dynamic research teams * Coordinate educational efforts from the research community to the industry and the public. Adopt Minutes of Summer Meeting (July 31, 2012) (Nahla Bassil) (5 min) · Proposed revisions · Adoption of minutes 2013 RosEXEC election (2 min) * After 3 years of excellent service the following US members: John Clark, Kevin Folta, Ksenija Gasic, Amy Iezzoni, and Jim McFerson, will be rotating off the RosEXEC in January of 2013. * International liaison members, Michela Troggio (EU) and Thomas Debener (EU) will be rotating off in January of 2013 after 2 years of excellent service. * 2013 RosEXEC election of new members to replace those rotating off the Committee is currently underway. To date there are 6 confirmed RosEXEC nominees and 4 international liaison nominees. The election is tentatively scheduled for Nov 5th to Nov 16th. Newly elected members will begin their terms at PAG XXI. Emerging Technologies (Ksenija Gasic) (20 min) * Future genotyping platforms: SNP arrays versus GBS * Currently available arrays * Current GBS projects within Rosaceae * Current limitations * Future potential USDA-NIFA-SCRI RosBREED2 Project Proposal (Amy Iezzoni, Cameron Peace) (8 min) * Update Coordination (Ksenija Gasic) (15 min) * Research Project Updates * Newly funded projects within the Rosaceae? * RosBREED * Updates from other funded SCRI, AFRI and NSF projects * Other research updates * GDR (Dorrie Main, Sook Jung) * International Project Collaborations Meeting reports and announcements for upcoming meetings (10 min) * Meeting Reports * 1st Rosaceae Tree Fruit Joint Crop Germplasm Committees (CGC) Meeting: ASHS, Friday Aug 3 * NCCC 212 Coordinating Comm for Small Fruit and Small Fruits CGC, 30Oct 2012, Tampa, FL * Other meeting reports? * Upcoming Meetings * X International Symposium on Integrating Canopy, Rootstock and Environmental Physiology in Orchard Systems, December 3-6, 2012, Stellenbosch , South Africa * PAG XXI, January 12-16, 2013, San Diego, California, USA * II International Symposium on Discovery and Development of Innovative Strategies for Postharvest Disease Management, April 29 - May 2, 2013, Kusadasi , Turkey * VI International Symposium on Almonds and Pistachios, May 27-31, 2013, Murcia, Spain * VIII International Peach Symposium, June 17-20, 2013, Matera, Italy * VII International Cherry Symposium, June 22-26, 2013, Plasencia, Spain * XIII International Workshop on Fire Blight, July 2-5, 2013, Zürich, Switzerland * VI International Symposium on Rose Research and Cultivation, August 25-30, 2013, Hannover, Germany * II International Symposium on Plum Pox Virus, September 3-6, 2013, Olomouc , Czech Republic * Other upcoming meetings? Other business: (5 min) Adjourn: 16:40 John (Jay) Norelli, Ph.D. Research Plant Pathologist USDA-ARS Appalachian Fruit Research Station 2217 Wiltshire Road Kearneysville, WV 25430 mailto:jay.norelli@ars.usda.gov (304) 725-3451 x264 FAX: (304) 728-2340 This electronic message contains information generated by the USDA solely for the intended recipients. Any unauthorized interception of this message or the use or disclosure of the information it contains may violate the law and subject the violator to civil or criminal penalties. If you believe you have received this message in error, please notify the sender and delete the email immediately.

13 years, 5 months

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