AgBioData-LIST August 2022

agbiodata-list@bioinfo.wsu.edu

2 participants
3 discussions

AgBiodata monthly webinar - Next Wed, Sept. 7th!

by Annarita Marrano

Hi everybody, Next Wed, *Sept. 7th*, we will have *Nicholas J. Provart* from the University of Toronto talking about the tools recently developed by his lab and available at the Bio-Analytic <http://bar.utoronto.ca/>Resource <http://bar.utoronto.ca> for analyzing large plant data sets. Below you can find more details about the webinar and the zoom link to attend the webinar. We hope you will join us. Best, Annarita -:-:-:-:-:-:-:-:-:-:-:-:-:-:-:-:-:-: Presenters: Dr. Nicholas J. Provart, the University of Toronto Host: Dr. Sunita Kumari Abstract: *Raising the BAR for Hypothesis Generation in Plant Biology Using Open Big Data.* We have developed tools, available as part of the Bio-Analytic Resource at http://bar.utoronto.ca, for exploring large data sets from plants, to allow deeper insights into biological questions. My lab’s three visual analytic tools for transcriptomic data (eFP Browser, ePlant, and eFP-Seq Browser) allow for rapid access to comprehensive gene expression compendia we have curated for identifying tissues, cell-types, or perturbations in which a gene is active or alternatively spliced. Interactions, be they protein-protein or regulatory, create networks. We have developed new tools for exploring such data, either from large collections of experimentally-supported protein-protein or protein-DNA interactions or from predicted interactions, including protein-protein interactions inferred from molecular docking studies. We are currently working on integrating large-scale phenotype data from field trials monitored by drone-based sensors into ePlants we have developed for several agronomically-important species to improve understanding of links between genotype and phenotype. *| 1P ET | 12P CT | 11A MT | 10A PT |* Find your local time here <https://www.timeanddate.com/worldclock/fixedtime.html?msg=AgBioData+monthly…> Topic: AgBioData Monthly Webinar Time: This is a recurring meeting Meet anytime Join Zoom Meeting https://us06web.zoom.us/j/82038356125?pwd=YVFMRElMdEpHZmtObXFvZlA4QVFXQT09 Meeting ID: 820 3835 6125 Passcode: 160683 One tap mobile +13017158592,,82038356125#,,,,*160683# US (Washington DC) +13092053325,,82038356125#,,,,*160683# US Dial by your location +1 301 715 8592 US (Washington DC) +1 309 205 3325 US +1 312 626 6799 US (Chicago) +1 646 931 3860 US +1 929 205 6099 US (New York) +1 386 347 5053 US +1 564 217 2000 US +1 669 444 9171 US +1 669 900 6833 US (San Jose) +1 719 359 4580 US +1 253 215 8782 US (Tacoma) +1 346 248 7799 US (Houston) Meeting ID: 820 3835 6125 Passcode: 160683 Find your local number: https://us06web.zoom.us/u/kF3akiFg7

2 years, 3 months

AgBiodata monthly webinar - TOMORROW!

by Annarita Marrano

Hi everybody, This is a gentle reminder of our webinar tomorrow (August 3rd). We will have *ThankGod Ebenezer* from EMBL-EBI (UK) talking about the African BioGenome Project (AfricaBP) project and the applications of genomic approaches for food security and biodiversity conservation in Africa. I have included below more details about the webinar and the zoom link to attend the webinar. We hope you will join us. Best, Annarita :-:-:-:-:-:-:-:-:-:-:-:-:-:-:-:-:-:-: Presenters: Dr. ThankGod Ebenezer, EMBL-EBI (UK). AfricanBP <https://africanbiogenome.org/> Host: Dr. Jacqueline Campbell Abstract: *The African BioGenome Project (AfricaBP): Genomics in the service of African biological diversity.* Food security and biodiversity conservation represents a substantial issue worldwide, and requires local solutions, as highlighted in the UN’s Sustainable Development Goals. I will discuss the progress and process of establishing a pan-African network to address this challenge through genomic science and how this could inform and influence policy across Africa. *| 1P ET | 12P CT | 11A MT | 10A PT |* Find your local time here <https://www.timeanddate.com/worldclock/fixedtime.html?msg=AgBioData+monthly…> Topic: AgBioData Monthly Webinar Time: This is a recurring meeting Meet anytime Join Zoom Meeting https://us06web.zoom.us/j/82038356125?pwd=YVFMRElMdEpHZmtObXFvZlA4QVFXQT09 Meeting ID: 820 3835 6125 Passcode: 160683 One tap mobile +15642172000,,82038356125#,,,,*160683# US +16469313860,,82038356125#,,,,*160683# US Dial by your location +1 564 217 2000 US +1 646 931 3860 US +1 669 444 9171 US +1 669 900 6833 US (San Jose) +1 929 205 6099 US (New York) +1 253 215 8782 US (Tacoma) +1 301 715 8592 US (Washington DC) +1 312 626 6799 US (Chicago) +1 346 248 7799 US (Houston) +1 386 347 5053 US Meeting ID: 820 3835 6125 Passcode: 160683 Find your local number: https://us06web.zoom.us/u/kF3akiFg7

2 years, 4 months

AG2PI Field Day: Industry Showcase of G2P solutions

by Scott, Nicole M [AGRON]

Dear AgBioData community members, The next Agricultural Genome to Phenome Initiative (AG2PI) Field Day is on Wednesday, August 17 from 10:30 AM to 12:00 PM (Central Time, UTC-5). In this field day, we will hear from scientists at two companies that develop tools for genomic and phenomic research and analysis. Paul McMahon, from Phenospex, and Andrea Johnstone, from EpiCypher, will describe the work being done at their respective companies to facilitate genome to phenome discoveries. Please note: this field day is a result of an open call for presenters; AG2PI does not endorse or otherwise benefit from the companies presenting at this event. We invite you to register for this Zoom event at https://tinyurl.com/AG2PI-FD20, where you will also find additional information. Upon registration, you will receive a confirmation email with information about joining the meeting. If you are unable to attend the live session, then you will be able to find a recording at ag2pi.org/<https://www.ag2pi.org/>, at a later date. You do not need to register to view the recording; it is readily available on the AG2PI website soon after the close of the event (generally within 24 hours). Feel free to share this message and attached flyer with colleagues at your institution. Kind regards, Nicole ------------------------ Nicole Scott, PhD Program Specialist Agricultural Genome to Phenome Initiative Iowa State University 1111 WOI Rd Ames, IA 50011 office: 1077 Roy J. Carver Co-Lab phone: 515-294-3945 ag2pi.org<https://www.ag2pi.org/> *** If you no longer wish to receive messages from AG2PI, then please visit https://www.ag2pi.org/join-ag2pi/unsubscribe/ to unsubscribe *** Please note, you cannot unsubscribe if you are receiving this message through a third party ***

2 years, 4 months

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AgBioData-LIST August 2022