AgBioData-LIST April 2025

agbiodata-list@bioinfo.wsu.edu

1 participants
3 discussions

by Annarita Marrano

Hi everybody, The registration for the *2025 AgBioData community workshop* is OPEN! This two-day workshop (*May 14-15, 9:00 AM - 1:00 PM CDT*) will feature presentations from current working groups, keynote speakers, and discussions on relevant data-related topics, such as AI and database sustainability. We'll share more details about the meeting agenda soon! *Register by May 5* and contribute your valuable experience and insights on data generation, management, and reuse. *Registration link (https://forms.gle/rBZbEYKj73Lz9H9J8 <https://forms.gle/rBZbEYKj73Lz9H9J8>).* I hope you will join us. Have a lovely weekend. Best, Annarita

1 week, 1 day

Registration open for the 2025 AgBioData community workshop on May 14-15

by Annarita Marrano

Dear everybody, The registration for the *2025 AgBioData community workshop* is now OPEN! This two-day workshop (*May 14-15, 9 AM - 1 PM CDT*) will feature presentations from current working groups, keynote speakers, and discussions on relevant data-related topics (e.g., AI, database sustainability). We will share more details on the meeting agenda soon! *Register by May 5* and contribute with your valuable experience and insights on data generation, management, and reuse. *Registration link (https://forms.gle/rBZbEYKj73Lz9H9J8 <https://forms.gle/rBZbEYKj73Lz9H9J8>).* I hope you will join us. Have a lovely weekend. Best, Annarita

2 weeks

REMINDER - Monthly Webinar TOMORROW, April 2nd, at 12 PM CT

by Annarita Marrano

Hi everybody, Join us tomorrow, *April 2nd, at 12 PM CDT,* and meet iBeetle-Base <https://ibeetle-base.uni-goettingen.de/>, the new AgBioData member database. *Gregor Bucher *from the University of Gottingen will discuss this integrated genomic and phenotypic information resource for red flour beetle research. I have included more details about the webinar and the Zoom link to attend the webinar below. I hope you will join us. Best, Annarita :-:-:-:-:-:-:-:-:-:-:-:-:-:-:-:-:-:-: *Abstracts:* *iBeetle-Base - a phenotypic database with community edition* The red flour beetle *Tribolium castaneum* has become an important insect model organism to study gene function and RNAi mediated pest control. iBeetle-Base was developed to document morphological phenotypes from the genome-wide RNAi gene-knockdown screen iBeetle and has become an integrated resource of genomic and phenotypic information for *Tribolium castaneum* research. Since our last release in 2024, iBeetle-Base allows the community to contribute RNAi phenotypes and associate Gene Ontology terms and publications with *Tribolium* genes (“community addition”). This novel functionality overcomes the lack of curators for databases of small communities. Further, we improved data accessibility, via programming interfaces alongside traditional HTML pages, which facilitates the automatic usage of the database by scripting and third-party tools. Importantly, this phenotypic database with its special adaptations to small research communities could become the nucleus for other interlinked databases in the future. iBeetle-Base is freely accessible at https://ibeetle-base.uni-goettingen.de/ *| 1P ET | 12P CT | 11A MT | 10A PT |* Find your local time here <https://www.timeanddate.com/worldclock/fixedtime.html?msg=AgBioData+Monthly…> *Join Zoom Meetinghttps://us06web.zoom.us/j/82038356125?pwd=YVFMRElMdEpHZmtObXFvZlA4QVFXQT09 <https://us06web.zoom.us/j/82038356125?pwd=YVFMRElMdEpHZmtObXFvZlA4QVFXQT09>* Meeting ID: 820 3835 6125 Passcode: 160683

3 weeks, 4 days

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AgBioData-LIST April 2025