AgBioData-LIST April 2022

agbiodata-list@bioinfo.wsu.edu

1 participants
2 discussions

by Annarita Marrano

Hi everybody, After a break in April, we are back with our monthly webinar! Next Wed, *May 4th*, we will have *Karen Yook* and *Daniela Raciti* from Wormbase talking about how to bridge data generation and database curation through microPublications. Below you can find more details about the webinar and the zoom link to attend the webinar. We hope you will join us. Best, Annarita :-:-:-:-:-:-:-:-:-:-:-:-:-:-:-:-:-:-: Presenters: Dr. Karen Yook and Dr. Daniela Raciti, California Institute of Technology, Wormbase <https://wormbase.org/#012-34-5>. Host: Leonore Reiser Abstract: *Bridging the gap between data production and database curation through microPublications* To solve a long-standing problem in data loss and accessibility, we developed a publishing platform, microPublication Biology, to bridge data publishing and database curation. Our journal accepts single experiment articles (microPublications) and embeds curation within the article submission/publishing workflow. microPublication Biology is an online, peer-reviewed, open-access journal published by the Caltech Library and discoverable in PubMed. Starting with articles focused on nematode biology, we continually expand to more organism communities, including Arabidopsis and most recently Dictyostelium, Maize, and Cotton. Our system is set up so that upon publication, atomized data is delivered directly to authoritative databases for each community (e.g., WormBase, Flybase, PomBase, TAIR), ensuring timely delivery to biological databases for deep data integration. We will give an overview of our journal and its integrated curation workflow and present our latest publishing metrics. *| 1P ET | 12P CT | 11A MT | 10A PT |* Find your local time here <https://www.timeanddate.com/worldclock/fixedtime.html?msg=AgBioData+Monthly…> Topic: AgBioData Monthly Webinar Time: This is a recurring meeting Join Zoom Meeting https://us06web.zoom.us/j/82038356125?pwd=YVFMRElMdEpHZmtObXFvZlA4QVFXQT09 Meeting ID: 820 3835 6125 Passcode: 160683 One tap mobile +19292056099,,82038356125#,,,,*160683# US (New York) +13017158592,,82038356125#,,,,*160683# US (Washington DC) Dial by your location +1 929 205 6099 US (New York) +1 301 715 8592 US (Washington DC) +1 312 626 6799 US (Chicago) +1 669 900 6833 US (San Jose) +1 253 215 8782 US (Tacoma) +1 346 248 7799 US (Houston) Meeting ID: 820 3835 6125 Passcode: 160683 Find your local number: https://us06web.zoom.us/u/kF3akiFg7

2 years, 6 months

AgBioData 2022 Survey of Genomic, Genetic, and Breeding (GGB) Database Stakeholders

by Annarita Marrano

Dear AgBioData members, We are asking you to participate in a survey about standardized data curation principles and their implementation in data repositories for agricultural research and breeding programs. This survey was developed by the AgBioData consortium (https://www.agbiodata.org) in collaboration with Washington State University. Please disregard this email if you already received this survey and submitted your answers. The survey is anonymous, and your answers will be used to shape AgBioData's future goals and solutions for standardized data management in agriculture. If you are willing to participate, please submit your answers here <https://ncsu.qualtrics.com/jfe/form/SV_9Zv0sSXJhdz2bYO> by May 9th, 2022. Your opinion is valuable to us and can help AgBioData define better genomic, genetic, and breeding data curation practices. Best regards, Annarita Marrano On behalf of the AgBioData Steering Committee

2 years, 7 months

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AgBioData-LIST April 2022