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332 discussions

Development of a new apple 50K SNP Axiom array

by Peil, Andreas

Dear colleagues, the Julius Kühn-Institut (JKI), Institute for Breeding Research on Fruit Cops (ZO) in Dresden-Pillnitz (Germany) is currently developing a 50 k Axiom® SNP array for apple. JKI is the Federal Research Centre for Cultivated Plants in Germany and belongs to the Federal Ministry of Food and Agriculture. In agreement with the ministry, ZO is responsible for coordinating the activities on preservation of fruit genetic resources. Genotyping as a tool to improve the preservation efficiency (e.g. identification of duplicates, synonyms, homonyms) is therefore one of our tasks. Based on a multi-year discussion with the ministry and the advisory board of our national genebank network we got the order to develop an optimized SNP array useful for genotyping of the German apple collection (DGO) and other applications like GWAS. Making this array useful for the whole apple community is of high priority for us. Therefore, we initiated a discussion with international partners and ThermoFisher (array producer) and TraitGenetics (genotyping service provider) to support the development. Based on this discussion the new array should fulfill the following demands: § Results should be (at least to high content) comparable to results obtained with the Illumina 20k SNP array1 and the 480k Axiom® array2. § New reliable SNPs linked to specific traits or SNPs should be added to improve the evenly coverage of SNPs on all LGs and to fill existing gaps. The distribution of SNPs will be determined on both the GDDH133 genome sequence as well as the HFTH14 genome sequence. § If possible, SNPs markers specific for e.g. Malus sieversii and M. sylvestris should be added to allow the identification of wild species introgressions. JKI would be happy if you would agree to provide data/SNPs that could be useful for the new array. The array should be produced until the end of 2020 and later on commercially available for the whole apple community via ThermoFisher. JKI would appreciate your support and input very much. Do not hesitate to ask for more information. Contact details are: Julius Kühn-Institut Institute for Breeding Research on Fruit Crops Andreas Peil Pillnitzer Platz 3a D-01326 Dresden-Pillnitz Germany Tel.: +49 (0)3946 478010 Fax: +49 (0)3946 478002 Email: andreas.peil(a)julius-kuehn.de<mailto:andreas.peil@julius-kuehn.de> If you would like to participate and deliver SNP data and the respective information, please send them to: andreas.peil(a)julius-kuehn.de<mailto:andreas.peil@julius-kuehn.de> until 31st of May 2020. Looking forward to hearing from you Andreas Peil 1 Bianco, L. et al. Development and validation of a 20K single nucleotide polymorphism (SNP) whole genome genotyping array for apple (Malus ×domestica Borkh). PLoS One 9, e110377 (2014). 2 Bianco, L. et al. Development and validation of the Axiom® Apple480K SNP genotyping array. The Plant Journal 86, 62-74 (2016). 3 Daccord, N. et al. High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development. Nat. Genet. 49, 1099-1106 (2017). 4 Zhang, L. et al. A high-quality apple genome assembly reveals the association of a retrotransposon and red fruit colour. Nature Communications 10, 1494, doi:10.1038/s41467-019-09518-x (2019). Im Auftrag Dr. Andreas Peil __________________________________________________ Institut für Züchtungsforschung an Obst Julius Kühn-Institut Bundesforschungsinstitut für Kulturpflanzen Pillnitzer Platz 3a, 01326 Dresden Tel.: +49 (0) 3946 47 8010 Fax: +49 (0) 3946 47 8002 E-Mail: andreas.peil(a)julius-kuehn.de<mailto:andreas.peil@julius-kuehn.de> www.julius-kuehn.de<http://www.julius-kuehn.de/> www.deutsche-genbank-obst.de<http://www.deutsche-genbank-obst.de/> [http://www.jki.bund.de/typo3temp/pics/12b906050c.jpg][http://intranet.jki.b…] [10 Jahre gruen Slogan.jpg] Das Julius Kühn-Institut (JKI) vereint unter seinem Dach 17 Fachinstitute.. Das JKI berät als Forschungsinstitut des Bundesministeriums für Ernährung und Landwirtschaft (BMEL) die Politik. Es forscht u. a. in den Bereichen Pflanzenbau, Züchtung, Pflanzen-, Bienen- und Vorratsschutz sowie der Pflanzengesundheit. Hauptsitz ist Quedlinburg. Weitere Standorte sind Braunschweig, Berlin, Kleinmachnow, Dresden, Darmstadt, Dossenheim, Münster, Siebeldingen und Groß Lüsewitz.

5 years, 7 months

Two special issues in Agronomy on dormancy and domestication

by Sook Jung

Hi All, The journal Agronomy is accepting manuscripts for two special issues 1. The Molecular Mechanism and Approaches to Break Dormancy in Fruit Trees <https://www.rosaceae.org/sites/default/files/files/Dormancy_Fruit%20flyer.p…>: deadline for manuscript submissions 18 August 2020 2. Domestication and Transcription Factors Related to Important Traits in Horticultural Crops <https://www.rosaceae.org/sites/default/files/files/Domestication_Transcript…>: deadline for manuscript submissions 31 August 2020 Please see the GDR news page <https://www.rosaceae.org/node/10269575> to access the announcement in pdf or follow the link above. Best, Sook [image: Mailtrack] <https://mailtrack.io?utm_source=gmail&utm_medium=signature&utm_campaign=sig…> Sender notified by Mailtrack <https://mailtrack.io?utm_source=gmail&utm_medium=signature&utm_campaign=sig…> 01/23/20, 10:06:15 PM

5 years, 10 months

ISHS 10th International Peach Symposium

by Sook Jung

Dear All, ISHS X Peach Symposium will be held on 31 May - 4 June 2021 in Naoussa, Greece. https://www.fruitsciences.eu/peach2021/ [image: cid:image001.jpg@01D5CD30.C65AEE70] The Conference will be comprised of plenary and ordinary sessions and poster display sessions in the following sections: *Section 1:* Breeding (germplasm, rootstocks, cultivars) *Section 2:* Genetics, genomics and biotechnology *Section 3:* Plant physiology and abiotic stress conditions *Section 4:* Plant pathology and pest management *Section 5:* Nutrition, irrigation *Section 6:* Cultivation practices/Mechanizations *Section 7:* Postharvest physiology and technology/processing *Section 8:* Economy, trade and marketing policies Thanks, Sook [image: Mailtrack] <https://mailtrack.io?utm_source=gmail&utm_medium=signature&utm_campaign=sig…> Sender notified by Mailtrack <https://mailtrack.io?utm_source=gmail&utm_medium=signature&utm_campaign=sig…> 01/22/20, 11:28:20 AM

5 years, 10 months

Rosexec/RosIGI meeting at PAG

by Main, Doreen

Hi Folks, Please find attached the agenda for Sunday's open to all annual RosEXEC/RosIGI meeting and the minutes from the last meeting. The meeting will be held Sunday 10 to Noon in the Tower Room of the Handerley Hotel (shuttles provided from the Town and Country, or it's about an 8 min walk). Zoom access is available (see below). P.s. I will send out the GDR report later today. Please note, the RosEXEC elections will be held later this month, after PAG. Cheers Dorrie Join Zoom Meeting from PC, Mac, Linux, iOS, or Android: https://urldefense.proofpoint.com/v2/url?u=https-3A__wsu.zoom.us_j_96998506… Meeting ID: 969 985 065Join from WSU Conference Room System (Polycom) 1. Using the touch panel, or remote control, select 'Place a call' 2. Enter the IP address including periods: 162.255.37.113. Press the pound key twice '##' 4. Enter the Meeting ID: 969 985 0655. Press 'Call' Join from Conference Room System with SIP:969985065@zoomcrc.com Share Screen/Content WirelesslyGo to https://urldefense.proofpoint.com/v2/url?u=https-3A__share.zoom.us&d=DwIFAw… <https://urldefense.proofpoint.com/v2/url?u=https-3A__share.zoom.us_&d=DwIFA… > and enter the Zoom Meeting ID: 969 985 065 Join by Telephone (long distance) For higher quality, dial a number based on your current location. Dial: US: +1 669 900 9128 or +1 646 558 8656Meeting ID:969 985 065Phone one-tap:US: +16699009128,,969985065#<tel:+16699009128,,969985065#> or +16465588656,,969985065#<tel:+16465588656,,969985065#> International numbers<https://urldefense.proofpoint.com/v2/url?u=https-3A__wsu.zoom.us_u_ab2QdAUF… > For more information regarding WSU's Zoom service, please go to its.wsu.edu/zoom<https://its.wsu.edu/wsu-video-conferencing-services/> Dorrie Main, PhD Professor of Bioinformatics Interim Chair, Department of Horticulture Department of Horticulture Washington State University 45 Johnson Hall Pullman, WA 99164-6414 Tel: 509-335-2774 (office) Email: dorrie(a)wsu.edu<mailto:dorrie@wsu.edu> URL: http://www.bioinfo.wsu.edu<http://www.bioinfo.wsu.edu/>

5 years, 11 months

RosEXEC/RosIGI Annual Meeting on Sunday Jan 12, 10 AM to 12 PM at Handerly Hotel

by Sook Jung

Hi All, Below is the time/location for our meeting this year at PAG. RosEXEC/RosIGI Annual Meeting, Sunday Jan 12, 10:00 AM-12:00 PM, Tower room - Handerly Hotel Safe travel and hope to see you soon! Sook [image: Mailtrack] <https://mailtrack.io?utm_source=gmail&utm_medium=signature&utm_campaign=sig…> Sender notified by Mailtrack <https://mailtrack.io?utm_source=gmail&utm_medium=signature&utm_campaign=sig…> 01/09/20, 04:23:50 PM

5 years, 11 months

International Strawberry Genomics meeting at PAG (Monday, January 13th at 1 PM)

by Sook Jung

Hi All, An 'International Strawberry Genomics' meeting (which is open to everyone) will be held on Monday, January 13th at 1pm in the Balboa Room at Handlery Hotel (950 Hotel Circle North, San Diego). The goal of this meeting is to discuss ongoing efforts in strawberry genomics, establish new collaborations, and make any other announcements to the community. Unfortunately the primary venue Town & Country hotel is undergoing extensive renovation, and so quite a few events have been moved to the nearby Handlery Hotel complex. A regular shuttle bus service will be provided or is roughly a 300 yard walk from the conference center. Please also note that we have this room on condition that “outside food & beverages are not permitted – failure to comply will result in a penalty fine". Best, Patrick Edger edgerpat(a)msu.edu [image: Mailtrack] <https://mailtrack.io?utm_source=gmail&utm_medium=signature&utm_campaign=sig…> Sender notified by Mailtrack <https://mailtrack.io?utm_source=gmail&utm_medium=signature&utm_campaign=sig…> 12/20/19, 03:57:45 PM

5 years, 11 months

REMINDER: Nominations for RosEXEC Elections

by Christopher Saski

Hi Everyone, Reminder about the nominations for the RosEXEC elections. See details below. Best wishes, Chris From: "Main, Doreen" <dorrie(a)wsu.edu> Date: Monday, December 2, 2019 at 1:27 PM To: Chris Saski <saski(a)clemson.edu>, Ellen Thompson <Ellen(a)pacificberrybreeding.com> Cc: "gdr-list(a)bioinfo.wsu.edu" <gdr-list(a)bioinfo.wsu.edu>, "rosexec-list(a)bioinfo.wsu.edu" <rosexec-list(a)bioinfo.wsu.edu>, "bioinfo(a)wsu.edu" <bioinfo(a)wsu.edu> Subject: Clarification re RosEXEC Elections Hi Folks, Just to clarify, we are looking for people to be nominated to serve on the RosEXEC. If you are nominating someone, please check with them that they are willing to be nominated and understand what is required if they are elected. For current members and their terms, please see the membership page at https://www.rosaceae.org/community/rosexec_2019. Many thanks Dorrie RosEXEC Membership 2019 | GDR<https://www.rosaceae.org/community/rosexec_2019> term starts (jan) term ends (jan) last name first name crop group focus inst region; rosoid pome stone; 2017: 2020: chavez: dario 1.0: univ: s: 2017: 2020: saski ... www.rosaceae.org Dorrie Main, PhD Professor of Bioinformatics Interim Chair, Department of Horticulture Department of Horticulture Washington State University 45 Johnson Hall Pullman, WA 99164-6414 Tel: 509-335-2774 (office) Email: dorrie(a)wsu.edu<mailto:dorrie@wsu.edu> URL: www.bioinfo.wsu.edu<http://www.bioinfo.wsu.edu/> ________________________________ From: Christopher Saski <saski(a)clemson.edu> Sent: Monday, December 2, 2019 10:05 AM To: Ellen Thompson <Ellen(a)pacificberrybreeding.com> Cc: gdr-list(a)bioinfo.wsu.edu <gdr-list(a)bioinfo.wsu.edu>; rosexec-list(a)bioinfo.wsu.edu <rosexec-list(a)bioinfo.wsu.edu>; bioinfo(a)wsu.edu <bioinfo(a)wsu.edu> Subject: [GDR] Re: [Rosexec-list] RosEXEC Elections Hi All, My apologies. If you are already a RosEXEC member, please disregard. Best wishes, Chris From: Ellen Thompson <Ellen(a)pacificberrybreeding.com> Date: Monday, December 2, 2019 at 1:04 PM To: Chris Saski <saski(a)clemson.edu> Cc: "bioinfo(a)wsu.edu" <bioinfo(a)wsu.edu>, "gdr-list(a)bioinfo.wsu.edu" <gdr-list(a)bioinfo.wsu.edu>, "rosexec-list(a)bioinfo.wsu.edu" <rosexec-list(a)bioinfo.wsu.edu> Subject: Re: [Rosexec-list] RosEXEC Elections Hi Chris, Thank you for the nomination, however I am currently sitting on the RosExec committee as an industry resource. If I'm not mistaken, I think I have 1 year of service left. Perhaps you are suggesting a re-nomination? Please clarify. Kindly, Ellen Ellen Thompson Pacific Berry Breeding, LLC 541-602-0449 Ellen(a)pacificberrybreeding.com<mailto:Ellen@pacificberrybreeding.com> Confidentiality Notice: This email message, including any attachments, is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of this message is prohibited and may be against the law. If you are not the intended recipient, please contact the sender by replying to the original email and destroy all copies (electronic and print) of the original message. On Mon, Dec 2, 2019 at 6:25 AM Christopher Saski <saski(a)clemson.edu<mailto:saski@clemson.edu>> wrote: Dear Colleague, I want to nominate you for a three-year-term U.S. membership in RosEXEC – the U.S. Rosaceae Genomics, Genetics, and Breeding Executive Committee (www.rosaceae.org/community/us_rosexec<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.rosaceae.org_commun…>). The mission of RosEXEC is to: * Serve as a communication and coordination focal point for the U.S. Rosaceae genomics, genetics, and breeding community. * Define research priorities based on input from the industry and research community. * Facilitate scientific interaction and foster dynamic research teams. * Promote research priorities. * Coordinate educational efforts from the research community to the industry and the public. * Serve as an official steering committee for the Genome Database for Rosaceae An election will take place from December 13th to January 11th. Any U.S. Rosaceae genomics, genetics, and breeding researcher or interested party is allowed to cast a vote. The five candidates with the most votes will join RosEXEC from January 2020 to January 2023. To help inform voters, two items are provided on every candidate: (1) a brief statement (100-word max) on proposed contributions to the RosEXEC mission (2) a short CV (1-2 pages is fine) If you are willing to become a RosEXEC member, could you please send me the above two items for you? These documents will be uploaded to the GDR, with links to them on the voting page. Thanks for considering officially supporting the RosEXEC mission. Regards, Chris Saski Christopher A. Saski Chair, RosEXEC Associate Professor of Systems Genetics Department of Plant and Environmental Sciences  306B Biosystems Research Complex  105 Collings Street Clemson University, Clemson, SC 29634  saski(a)clemson.edu<mailto:saski@clemson.edu> | 864-656-6929 _______________________________________________ Rosexec-list mailing list -- rosexec-list(a)bioinfo.wsu.edu<mailto:rosexec-list@bioinfo.wsu.edu> To unsubscribe send an email to rosexec-list-leave(a)bioinfo.wsu.edu<mailto:rosexec-list-leave@bioinfo.wsu.edu>

6 years

Re: [Rosexec-list] RosEXEC Elections

by Christopher Saski

Hi All, My apologies. If you are already a RosEXEC member, please disregard. Best wishes, Chris From: Ellen Thompson <Ellen(a)pacificberrybreeding.com> Date: Monday, December 2, 2019 at 1:04 PM To: Chris Saski <saski(a)clemson.edu> Cc: "bioinfo(a)wsu.edu" <bioinfo(a)wsu.edu>, "gdr-list(a)bioinfo.wsu.edu" <gdr-list(a)bioinfo.wsu.edu>, "rosexec-list(a)bioinfo.wsu.edu" <rosexec-list(a)bioinfo.wsu.edu> Subject: Re: [Rosexec-list] RosEXEC Elections Hi Chris, Thank you for the nomination, however I am currently sitting on the RosExec committee as an industry resource. If I'm not mistaken, I think I have 1 year of service left. Perhaps you are suggesting a re-nomination? Please clarify. Kindly, Ellen Ellen Thompson Pacific Berry Breeding, LLC 541-602-0449 Ellen(a)pacificberrybreeding.com<mailto:Ellen@pacificberrybreeding.com> Confidentiality Notice: This email message, including any attachments, is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution of this message is prohibited and may be against the law. If you are not the intended recipient, please contact the sender by replying to the original email and destroy all copies (electronic and print) of the original message. On Mon, Dec 2, 2019 at 6:25 AM Christopher Saski <saski(a)clemson.edu<mailto:saski@clemson.edu>> wrote: Dear Colleague, I want to nominate you for a three-year-term U.S. membership in RosEXEC – the U.S. Rosaceae Genomics, Genetics, and Breeding Executive Committee (www.rosaceae.org/community/us_rosexec<http://www.rosaceae.org/community/us_rosexec>). The mission of RosEXEC is to: * Serve as a communication and coordination focal point for the U.S. Rosaceae genomics, genetics, and breeding community. * Define research priorities based on input from the industry and research community. * Facilitate scientific interaction and foster dynamic research teams. * Promote research priorities. * Coordinate educational efforts from the research community to the industry and the public. * Serve as an official steering committee for the Genome Database for Rosaceae An election will take place from December 13th to January 11th. Any U.S. Rosaceae genomics, genetics, and breeding researcher or interested party is allowed to cast a vote. The five candidates with the most votes will join RosEXEC from January 2020 to January 2023. To help inform voters, two items are provided on every candidate: (1) a brief statement (100-word max) on proposed contributions to the RosEXEC mission (2) a short CV (1-2 pages is fine) If you are willing to become a RosEXEC member, could you please send me the above two items for you? These documents will be uploaded to the GDR, with links to them on the voting page. Thanks for considering officially supporting the RosEXEC mission. Regards, Chris Saski Christopher A. Saski Chair, RosEXEC Associate Professor of Systems Genetics Department of Plant and Environmental Sciences  306B Biosystems Research Complex  105 Collings Street Clemson University, Clemson, SC 29634  saski(a)clemson.edu<mailto:saski@clemson.edu> | 864-656-6929 _______________________________________________ Rosexec-list mailing list -- rosexec-list(a)bioinfo.wsu.edu<mailto:rosexec-list@bioinfo.wsu.edu> To unsubscribe send an email to rosexec-list-leave(a)bioinfo.wsu.edu<mailto:rosexec-list-leave@bioinfo.wsu.edu>

6 years

SAVE THE DATE -10th Rosaceae Genomics Conference. Barcelona, 31 March - 3 April 2020.

by Main, Doreen

If you can not see this email, please press here <https://urldefense.proofpoint.com/v2/url?u=http-3A__geyseco.acmbtrc.com_env…> [https://urldefense.proofpoint.com/v2/url?u=https-3A__images.acmbtrc.com_ima… ]<https://urldefense.proofpoint.com/v2/url?u=http-3A__geyseco.acmbtrc.com_url…> 10th ROSACEAE GENOMICS CONFERENCE Barcelona, March 31st- April 3rd, 2020. Dear colleagues, We are pleased and honored to announce that the 10th Rosaceae Genomics Conference will take place in Barcelona from the 31st of March to the 3rd of April, 2020. The meeting will be held at the Catalonia Barcelona Plaza Hotel in the city center. Shortly we will send the event website where you will find additional information about the conference. See you in Barcelona! Pere Arús & Amparo Monfort IRTA (Institute for Food and Agriculture Research and Technology) Centre for Research in Agricultural Genomics (CRAG) CSIC-IRTA-UAB-UB Edifici CRAG - Campus UAB 08193 Cerdanyola del Vallès Barcelona, Spain [Image]<https://urldefense.proofpoint.com/v2/url?u=http-3A__geyseco.acmbtrc.com_url…> RGC10 | Technical Secretariat GEYSECO C/Marina, 27 08005 - Barcelona +34 93 221 22 42 barcelona(a)geyseco.es<mailto:barcelona@geyseco.es> [Image]<https://urldefense.proofpoint.com/v2/url?u=http-3A__geyseco.acmbtrc.com_url…> [Facebook]<https://urldefense.proofpoint.com/v2/url?u=http-3A__geyseco.acmbtrc.com_url…> [Twitter]<https://urldefense.proofpoint.com/v2/url?u=http-3A__geyseco.acmbtrc.com_url…> [E-Mail]<mailto:barcelona@geyseco.es> [Web Site]<https://urldefense.proofpoint.com/v2/url?u=http-3A__geyseco.acmbtrc.com_url…> [https://urldefense.proofpoint.com/v2/url?u=https-3A__images.acmbtrc.com_pub… ]<https://urldefense.proofpoint.com/v2/url?u=http-3A__geyseco.acmbtrc.com_url…> Darme de baja<https://urldefense.proofpoint.com/v2/url?u=http-3A__geyseco.acmbtrc.com_uns…> | Modificar mis datos<https://urldefense.proofpoint.com/v2/url?u=http-3A__geyseco.acmbtrc.com_new…> [https://urldefense.proofpoint.com/v2/url?u=http-3A__geyseco.acmbtrc.com_pix… ]

6 years, 4 months

Post-doctoral Research Associate needed for the WSU pome fruit breeding program

by Evans, Kate

I'm looking for a Post-doctoral Research Associate to join the pome fruit breeding program at the Washington State University Tree Fruit Research & Extension Center in Wenatchee, WA. The position will focus on developing the application of DNA-informed breeding at the Center, principally in the apple scion breeding program. If you are interested or know anyone who might be interested, please contact me asap. Thanks Kate Kate Evans Pome Fruit Breeder Washington State University, Department of Horticulture WSU Tree Fruit Research and Extension Center 1100 North Western Avenue Wenatchee, WA 98801 Email: kate_evans(a)wsu.edu<mailto:kate_evans@wsu.edu> Office phone: 509 293 8760 Pome Fruit Breeding <http://tfrec.cahnrs.wsu.edu/breed/> Achieving sustainable cultivation of apples<https://shop.bdspublishing.com/checkout/Store/bds/Detail/WorkGroup/3-190-52…> [cid:image001.png@01D51B84.16EA3B20]

6 years, 6 months

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GDR-LIST