GDR-LIST

gdr-list@bioinfo.wsu.edu

328 discussions

Two job opportunities: Blueberry pre-breeder & Strawberry molecular scientist

by smithryan2215＠yahoo.com

Hi everyone, Two job opportunities have come to my attention: First is Pre-Breeder/Applied Research Lead in blueberry with Fall Creek Nursery in Oregon: https://www.fallcreeknursery.com/careers/open-positions/pre-breeder-appli... Second is Molecular Scientist in strawberry with Simplot Plant Sciences in Idaho. The position description is attached (Word doc). https://www.shippingcampus.com/ Cameron

4 years, 11 months

Invitation: PAG Fruit and Nut Workshop Poll

by Dorrie Main (via Doodle)

Hi, Dorrie Main (dorrie(a)wsu.edu) invites you to participate in the Doodle poll PAG Fruit and Nut Workshop Poll. Hi Folks, A decision needs to be made about hosting the Fruit and Nut Workshop at PAG 2021. Currently scheduled for March, the 2021 organizer, Dr. Sara Montanari, will be unable to attend due to covid travel restrictions. If enough people express an intent to attend PAG and the F&N Workshop in 2021, an alternative organizer will be sought. We would appreciate if you could complete the poll by Wednesday October 14th. Many Thanks Dorrie Main, Sara Montnari, Nahla Bassil and David Chagne p.s. sorry if you are on multiple lists and recieve this request more than once. Participate now https://link.e.doodle.com/ls/click?upn=tj06F74K67F9jS-2B7bRMCnoBLLqs9GAYYN-… Report this poll as spam https://link.e.doodle.com/ls/click?upn=tj06F74K67F9jS-2B7bRMCnjnftyLkMUGNCW… ---------------------------------------------------------------------- Best wishes, The Doodle Team ---- Doodle AG, Werdstrasse 21, 8021 Zürich Why did I receive this email? https://link.e.doodle.com/ls/click?upn=tj06F74K67F9jS-2B7bRMCns5zuGsC2KKv4-… Unsubscribe From This List https://link.e.doodle.com/asm/unsubscribe/?user_id=6019856&data=6PSRNa9HHxs… | Manage Email Preferences https://link.e.doodle.com/asm/?user_id=6019856&data=e7PL3CXW0Ntp4lwyEL6A7Od…

4 years, 11 months

Post Doctoral Position at Clemson University

by Ksenija Gasic

The Peach Team in the Department of Plant and Environmental Science, at Clemson University, seeks to employ a highly motivated postdoctoral scientist to conduct research to unravel the genetic basis of Armillaria Root Rot (ARR) resistance/tolerance/susceptibility in Prunus species. This position will be dynamically integrated among an interdisciplinary research team as part of newly funded USDA-Specialty Crop Research Initiative program entitled "Solutions to the Armillaria root rot threat affecting the U.S. stone fruit industry". The long-term goal of the project is to improve the profitability and sustainability of the U.S. stone fruit and nut industries through the development of Armillaria Root Rot - resistant and horticulturally acceptable rootstocks. The outcomes of this proposal will provide the 'building blocks' needed to enable and accelerate on-going Prunus breeding programs, as well as support the testing of cultural practices as short-term solutions to increase tree longevity on replant sites. A combination of novel horticultural approaches with immediate implementation will be combined with genomics, genetic diversity, metabolomics and functional genomics approaches to discover natural (local and exotic) sources of ARR resistance and translate it directly into DNA and biochemical diagnostic tools that will lead to novel rootstocks for long-term sustainability of the peach, cherry, and almond industries. This position is located at the Clemson University main campus and will focus on identifying, characterizing, and utilizing sources of durable genetic resistance to Armillaria/Desarmillaria to enable breeding solutions for ARR resistance/tolerance; monitoring effects of short- and long-term system approaches to manage ARR; and participate in outreach activities to facilitate the adoption of results. The application period is open until suitable candidate is found. Review and selection of applicants will start after October 16th. The announcement can be viewed using the following link: https://apply.interfolio.com/78924 We seek applicants who have a strong background in horticulture, plant molecular genetics, genomics, and functional genomics. Excellent oral and written communication skills and the ability and willingness to work in both field and in the molecular lab in a collaborative research environment are essential. Applications must be submitted electronically and include a resume that includes educational background, publications, and work experience (Ph.D. thesis and beyond), as well as a brief statement of research interests and goals. Please also provide contact information for at least three references. This position requires a doctoral (Ph.D.) degree in the field of horticulture, plant sciences, genetics, plant breeding or related disciplines. This is a fixed-term appointment funded on yearly basis until the end of the project (August 2024) from date of hire. More information about Clemson University and resources for Postdoctoral scholars can be found in the following website: https://www.clemson.edu/research/post-docs/. Ksenija ________________________________ Ksenija Gasic, Ph.D. CLEMSON UNIVERSITY Professor of Horticulture Peach Breeding and Genetics Department of Plant and Environmental Sciences Office: 306A Biosystems Research Complex |105 Collings St., Clemson, SC 29634 Office Phone: 864.656.3664 | Cell 864.723.2009

4 years, 11 months

Curator position at the National Clonal Germplasm Repository at Corvallis

by Sook Jung

*From:* Hummer, Kim <kim.hummer(a)usda.gov> *Sent:* Tuesday, August 11, 2020 11:01 AM *To:* ARS-PWA-CORVALLIS-NCGR-ALL <ARS-PWA-CORVALLIS-NCGR-ALL(a)usda.gov> *Subject:* Curator position at the National Clonal Germplasm Repository at Corvallis Dear Germplasm Folks! An announcement for the *curator* position (Horticulturist/Geneticist) with the USDA ARS National Clonal Germplasm Repository in Corvallis, Oregon, has been posted on USAJOBS.GOV. This will replace the *vice-Postman* position. The application period is *Tuesday, August 11, 2020, until Monday August 31, 2020*. The announcement can be viewed using the following link: https://www.usajobs.gov/GetJob/ViewDetails/555254600 <https://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.usajo…> This is a SY position (GS12) for someone with experience in Specialty Crop (Fruit/Nut/Hop/Mint) germplasm. Responsibilities will include plant exploration, management of clean germplasm collections, evaluation and characterization of traits, and data management in GRIN. Thanks for your help in forwarding this message. We encourage all qualified scientists to apply. Sincerely, *Kim E. Hummer* Research Leader for USDA ARS National Clonal Germplasm Repository Specialty Crop Curator 33447 Peoria Road Corvallis, Oregon 97333-2521 phone 541.738.4201 work cell 541.224.4127 fax 541.738.4205 Kim.Hummer(a)usda.gov This electronic message contains information generated by the USDA solely for the intended recipients. Any unauthorized interception of this message or the use or disclosure of the information it contains may violate the law and subject the violator to civil or criminal penalties. If you believe you have received this message in error, please notify the sender and delete the email immediately.

5 years, 1 month

Technology Write For Us — Submit Guest Post at Publishthispost Blog

by shankarpublish＠gmail.com

Technology Write For Us — Submit Guest Post at Publishthispost Blog, Category accepted Business, Technology, Health, Travel, Apps, Gadgets, Social Network, Finance, Education, Wellness, Lifestyle. Enhance your website search engine rankings and web traffic using guest blogging opportunities for small business owners. https://publishthispost.com/write-for-us-submit-guest-post/

5 years, 2 months

Development of apple 50K Axiom array

by Peil, Andreas

Dear colleagues/apple community, The Federal Ministry for Food and Agriculture in Germany asked the Julius Kühn-Institut (JKI), Institute for Breeding Research on Fruit Crops (ZO) to develop a 50K SNP array for the genotyping of the apple germplasm collected in the Deutsche Genbank Obst (German Fruit Gene Bank). A future purpose of the genotypic data will be GWAS. The array will be available to the public. I would therefore like to ask again for your support in the development of a new apple 50k Axiom SNP array, which is in progress with few international partners (Michela Troggio, Helene Muranty, Charles-Eric Durel, Eric van de Weg, Luca Bianco and Nicholas Howard). The new array shall deliver a good and evenly coverage of the apple genome and comparability to both the 20K Illumina SNP array and the 480K Axiom SNP array. The new reference genome HFTH1 will be used to fill in the gaps existing in GDDH13 with SNPs. Therefore, a discovery panel was defined for realignment to HFTH1 by Eric, Nick and Luca. Cultivars were chosen from different clusters gained from principle component analysis done by Nick to ensure high diversity. Eric, Nick and Luca also selected a set of Malus wild species accessions of M. baccata, M. orientalis, M. sieversii, M. sylvestris and M. ×robusta, for realignment to HFTH1 to possibly identify introgressions from these wild species in domesticated apple. WUR in Wageningen has offered capacity for realignment and is in progress. The Axiom array will have space for 46K SNPs in a 6 × 6 µM matrix. The size of the sequences on the array will be 35 nts. We decided to work with haplo blocks. A haplo block will span 125K and will be represented by 8 SNPs with additional blocks for chromosome ends. With an estimated size of 651 Mb of the apple genome, this would require around 41,800 SNPs. The remaining 4,200 SNPS will be contributed towards Malus wild species specific SNPs, for SNPs related to traits (e.g. resistance, quality, self-incompatibility) and possibly to maternal inherited SNPs. We suggest one species specific SNP / Mb. If we calculate 650 Mb for the apple genome this would require a total of 3,250 SNPs that will be needed for wild species. We have 950 SNPs left for trait related and maternal inherited SNPs. I would like to invite you to support and participate in the development of the array by contributing sequences of reliable SNPs linked to traits of interest and/or SNPs inherited maternal and/or your experience. The deadline for contributing SNP sequences is July 1st 2020. If you are willing to promote this project in another way, please contact me as soon as possible. Looking forward to hearing from you Im Auftrag Dr. Andreas Peil __________________________________________________ Institut für Züchtungsforschung an Obst Julius Kühn-Institut Bundesforschungsinstitut für Kulturpflanzen Pillnitzer Platz 3a, 01326 Dresden Tel.: +49 (0) 3946 47 8010 Fax: +49 (0) 3946 47 8002 E-Mail: andreas.peil(a)julius-kuehn.de<mailto:andreas.peil@julius-kuehn.de> www.julius-kuehn.de<http://www.julius-kuehn.de/> www.deutsche-genbank-obst.de<http://www.deutsche-genbank-obst.de/> [http://www.jki.bund.de/typo3temp/pics/12b906050c.jpg][http://intranet.jki.b…] [10 Jahre gruen Slogan.jpg] Das Julius Kühn-Institut (JKI) vereint unter seinem Dach 17 Fachinstitute.. Das JKI berät als Forschungsinstitut des Bundesministeriums für Ernährung und Landwirtschaft (BMEL) die Politik. Es forscht u. a. in den Bereichen Pflanzenbau, Züchtung, Pflanzen-, Bienen- und Vorratsschutz sowie der Pflanzengesundheit. Hauptsitz ist Quedlinburg. Weitere Standorte sind Braunschweig, Berlin, Kleinmachnow, Dresden, Darmstadt, Dossenheim, Münster, Siebeldingen und Groß Lüsewitz.

5 years, 3 months

Development of a new apple 50K SNP Axiom array

by Peil, Andreas

Dear colleagues, the Julius Kühn-Institut (JKI), Institute for Breeding Research on Fruit Cops (ZO) in Dresden-Pillnitz (Germany) is currently developing a 50 k Axiom® SNP array for apple. JKI is the Federal Research Centre for Cultivated Plants in Germany and belongs to the Federal Ministry of Food and Agriculture. In agreement with the ministry, ZO is responsible for coordinating the activities on preservation of fruit genetic resources. Genotyping as a tool to improve the preservation efficiency (e.g. identification of duplicates, synonyms, homonyms) is therefore one of our tasks. Based on a multi-year discussion with the ministry and the advisory board of our national genebank network we got the order to develop an optimized SNP array useful for genotyping of the German apple collection (DGO) and other applications like GWAS. Making this array useful for the whole apple community is of high priority for us. Therefore, we initiated a discussion with international partners and ThermoFisher (array producer) and TraitGenetics (genotyping service provider) to support the development. Based on this discussion the new array should fulfill the following demands: § Results should be (at least to high content) comparable to results obtained with the Illumina 20k SNP array1 and the 480k Axiom® array2. § New reliable SNPs linked to specific traits or SNPs should be added to improve the evenly coverage of SNPs on all LGs and to fill existing gaps. The distribution of SNPs will be determined on both the GDDH133 genome sequence as well as the HFTH14 genome sequence. § If possible, SNPs markers specific for e.g. Malus sieversii and M. sylvestris should be added to allow the identification of wild species introgressions. JKI would be happy if you would agree to provide data/SNPs that could be useful for the new array. The array should be produced until the end of 2020 and later on commercially available for the whole apple community via ThermoFisher. JKI would appreciate your support and input very much. Do not hesitate to ask for more information. Contact details are: Julius Kühn-Institut Institute for Breeding Research on Fruit Crops Andreas Peil Pillnitzer Platz 3a D-01326 Dresden-Pillnitz Germany Tel.: +49 (0)3946 478010 Fax: +49 (0)3946 478002 Email: andreas.peil(a)julius-kuehn.de<mailto:andreas.peil@julius-kuehn.de> If you would like to participate and deliver SNP data and the respective information, please send them to: andreas.peil(a)julius-kuehn.de<mailto:andreas.peil@julius-kuehn.de> until 31st of May 2020. Looking forward to hearing from you Andreas Peil 1 Bianco, L. et al. Development and validation of a 20K single nucleotide polymorphism (SNP) whole genome genotyping array for apple (Malus ×domestica Borkh). PLoS One 9, e110377 (2014). 2 Bianco, L. et al. Development and validation of the Axiom® Apple480K SNP genotyping array. The Plant Journal 86, 62-74 (2016). 3 Daccord, N. et al. High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development. Nat. Genet. 49, 1099-1106 (2017). 4 Zhang, L. et al. A high-quality apple genome assembly reveals the association of a retrotransposon and red fruit colour. Nature Communications 10, 1494, doi:10.1038/s41467-019-09518-x (2019). Im Auftrag Dr. Andreas Peil __________________________________________________ Institut für Züchtungsforschung an Obst Julius Kühn-Institut Bundesforschungsinstitut für Kulturpflanzen Pillnitzer Platz 3a, 01326 Dresden Tel.: +49 (0) 3946 47 8010 Fax: +49 (0) 3946 47 8002 E-Mail: andreas.peil(a)julius-kuehn.de<mailto:andreas.peil@julius-kuehn.de> www.julius-kuehn.de<http://www.julius-kuehn.de/> www.deutsche-genbank-obst.de<http://www.deutsche-genbank-obst.de/> [http://www.jki.bund.de/typo3temp/pics/12b906050c.jpg][http://intranet.jki.b…] [10 Jahre gruen Slogan.jpg] Das Julius Kühn-Institut (JKI) vereint unter seinem Dach 17 Fachinstitute.. Das JKI berät als Forschungsinstitut des Bundesministeriums für Ernährung und Landwirtschaft (BMEL) die Politik. Es forscht u. a. in den Bereichen Pflanzenbau, Züchtung, Pflanzen-, Bienen- und Vorratsschutz sowie der Pflanzengesundheit. Hauptsitz ist Quedlinburg. Weitere Standorte sind Braunschweig, Berlin, Kleinmachnow, Dresden, Darmstadt, Dossenheim, Münster, Siebeldingen und Groß Lüsewitz.

5 years, 4 months

Two special issues in Agronomy on dormancy and domestication

by Sook Jung

Hi All, The journal Agronomy is accepting manuscripts for two special issues 1. The Molecular Mechanism and Approaches to Break Dormancy in Fruit Trees <https://www.rosaceae.org/sites/default/files/files/Dormancy_Fruit%20flyer.p…>: deadline for manuscript submissions 18 August 2020 2. Domestication and Transcription Factors Related to Important Traits in Horticultural Crops <https://www.rosaceae.org/sites/default/files/files/Domestication_Transcript…>: deadline for manuscript submissions 31 August 2020 Please see the GDR news page <https://www.rosaceae.org/node/10269575> to access the announcement in pdf or follow the link above. Best, Sook [image: Mailtrack] <https://mailtrack.io?utm_source=gmail&utm_medium=signature&utm_campaign=sig…> Sender notified by Mailtrack <https://mailtrack.io?utm_source=gmail&utm_medium=signature&utm_campaign=sig…> 01/23/20, 10:06:15 PM

5 years, 7 months

ISHS 10th International Peach Symposium

by Sook Jung

Dear All, ISHS X Peach Symposium will be held on 31 May - 4 June 2021 in Naoussa, Greece. https://www.fruitsciences.eu/peach2021/ [image: cid:image001.jpg@01D5CD30.C65AEE70] The Conference will be comprised of plenary and ordinary sessions and poster display sessions in the following sections: *Section 1:* Breeding (germplasm, rootstocks, cultivars) *Section 2:* Genetics, genomics and biotechnology *Section 3:* Plant physiology and abiotic stress conditions *Section 4:* Plant pathology and pest management *Section 5:* Nutrition, irrigation *Section 6:* Cultivation practices/Mechanizations *Section 7:* Postharvest physiology and technology/processing *Section 8:* Economy, trade and marketing policies Thanks, Sook [image: Mailtrack] <https://mailtrack.io?utm_source=gmail&utm_medium=signature&utm_campaign=sig…> Sender notified by Mailtrack <https://mailtrack.io?utm_source=gmail&utm_medium=signature&utm_campaign=sig…> 01/22/20, 11:28:20 AM

5 years, 7 months

Rosexec/RosIGI meeting at PAG

by Main, Doreen

Hi Folks, Please find attached the agenda for Sunday's open to all annual RosEXEC/RosIGI meeting and the minutes from the last meeting. The meeting will be held Sunday 10 to Noon in the Tower Room of the Handerley Hotel (shuttles provided from the Town and Country, or it's about an 8 min walk). Zoom access is available (see below). P.s. I will send out the GDR report later today. Please note, the RosEXEC elections will be held later this month, after PAG. Cheers Dorrie Join Zoom Meeting from PC, Mac, Linux, iOS, or Android: https://urldefense.proofpoint.com/v2/url?u=https-3A__wsu.zoom.us_j_96998506… Meeting ID: 969 985 065Join from WSU Conference Room System (Polycom) 1. Using the touch panel, or remote control, select 'Place a call' 2. Enter the IP address including periods: 162.255.37.113. Press the pound key twice '##' 4. Enter the Meeting ID: 969 985 0655. Press 'Call' Join from Conference Room System with SIP:969985065@zoomcrc.com Share Screen/Content WirelesslyGo to https://urldefense.proofpoint.com/v2/url?u=https-3A__share.zoom.us&d=DwIFAw… <https://urldefense.proofpoint.com/v2/url?u=https-3A__share.zoom.us_&d=DwIFA… > and enter the Zoom Meeting ID: 969 985 065 Join by Telephone (long distance) For higher quality, dial a number based on your current location. Dial: US: +1 669 900 9128 or +1 646 558 8656Meeting ID:969 985 065Phone one-tap:US: +16699009128,,969985065#<tel:+16699009128,,969985065#> or +16465588656,,969985065#<tel:+16465588656,,969985065#> International numbers<https://urldefense.proofpoint.com/v2/url?u=https-3A__wsu.zoom.us_u_ab2QdAUF… > For more information regarding WSU's Zoom service, please go to its.wsu.edu/zoom<https://its.wsu.edu/wsu-video-conferencing-services/> Dorrie Main, PhD Professor of Bioinformatics Interim Chair, Department of Horticulture Department of Horticulture Washington State University 45 Johnson Hall Pullman, WA 99164-6414 Tel: 509-335-2774 (office) Email: dorrie(a)wsu.edu<mailto:dorrie@wsu.edu> URL: http://www.bioinfo.wsu.edu<http://www.bioinfo.wsu.edu/>

5 years, 8 months

← Newer
1
...
5
6
7
8
9
10
11
...
33
Older →

Jump to page:

2025

2024

2023

2022

2021

2020

2019

2018

2017

2016

2015

2014

2013

2012

2011

2010

2009

2008

2007

2006

2005

GDR-LIST