Hi Folks,
Please forward this postition description to anyone you think might be interested in this position.
We are seeking a cadre of tomorrow's leaders to join our team on an exciting new "science to the marketplace" federally funded project. "RosBREED: Enabling Marker-Assisted Breeding in Rosaceae" is a four-year trans-disciplinary project focused on rosaceous crops (apple, cherry, peach, and strawberry) involving 12 U.S. research institutions, international collaborators, and private sector participants. RosBREED aims to identify crucial fruit breeding selection targets and efficient selection strategies, including a software-based pipeline for utilizing genomics and socio-economics knowledge for efficient delivery of new cultivars with superior fruit quality. Recruited team members will regularly interact with scientists and stakeholders across institutions and countries to achieve RosBREED goals.
BIMS Developer Position
We are seeking a post-doctoral associate to lead the development of breeding decision aid tools, databases, and other information management software aimed for the plant breeding community. The incumbent will interact closely and regularly with U.S. Rosaceae breeding programs to identify needs, gaps, and strengths of current breeding information management practices, and work with a programmer to synthesize a state-of-the-art Breeding Information Management System (BIMS) that is interoperable with genomic databases, statistical analysis packages, and able to match and surpass the needs of the Rosaceae breeding community. A strong background in quantitative genetics and great communication skills are required, and experience with plant breeding is highly desirable. The position is based on the Washington State University Campus in beautiful Pullman, WA and has a duration of 3-4 years (see www.rosbreed.org <http://www.rosbreed.org> ) Contact Dr. Cameron Peace cpeace(a)wsu.edu <mailto:cpeace@wsu.edu> or Dr. Gennaro Fazio gf35(a)cornell.edu <mailto:gf35@cornell.edu> for further information.
Gennaro Fazio, PhD
Apple Rootstock Breeder and Geneticist
Plant Genetic Resources Unit USDA ARS
Cornell University - 630 W. North St., Geneva, NY 14456
(315) 787-2480 Office (315) 787-2216 Fax
Dear US Based Rosaceae Genomics and Genetics Community,
I would like to thank all community members who nominated candidates for
RosEXEC. The list of nominees obtained so far does not have a single
Maloideae or industry candidate.
Therefore, the RosEXEC Membership subcommittee is extending nominations
until Friday Dec 4th to give you the opportunity to nominate Maloideae
members and industry members.
Please make sure to please confirm with the prospective candidates that
they are willing to be nominated and potentially serve before you submit
them as candidates to me.
A copy of the previous letter is pasted below.
Thank you,
Nahla Bassil, Chair, RosEXEC Membership Committee
Plant Geneticist
USDA-ARS, NCGR
33447 Peoria Rd.
Corvallis, OR 97333-2521
Tel: (541) 738-4214
Fax: (541) 738-4205
nahla.bassil(a)ars.usda.gov
It is time to nominate the 2010 USRosEXEC members.
After three/four years of excellent service the following US members are
rotating off the RosEXEC committee:
* Albert Abbott (Amygdaloideae, Univ, S),
* Chad Finn (Rosoideae, ARS, W),
* Abhaya Dandekar (Maloideae, Amygdaloideae Univ, W)
* Schuyler Korban (Maloideae, Univ, E)
* Gennaro Fazio (Maloideae, ARS, E)
The committee thus loses:
* 1 Rosoideae, 2.5 Maloideae and 1.5 Amygdaloideae crop focus
representatives;
* 3 university and 2 ARS representatives;
* 2 eastern location (E), 2 western location and 1 southern (S)
location representatives.
Members who will continue to serve in 2009 include Nahla Bassil, Chris
Dardick, Amit Dhingra, Jim Luby, Gayle Volk, Angela Baldo, Jim Hancock,
Jim McFerson, Bryon Sosinski, Philip Stewart and Cameron Peace, so no
need to nominate them as they will already be serving.
To help maintain a balanced committee, we are asking you to nominate, by
email, research and industry community members of whom one should have a
major focus on Rosoideae, two on Maloideae and two on Amygdaloideae.
Individuals with mixed focus can also be nominated. Please take this
into account when you nominate candidates and please confirm with the
prospective candidates that they are willing to be nominated and
potentially serve before you submit them as candidates to Nahla.
International liason member rotating off this year include Sue Gardiner
(Aus/NZ), Herman Silva (South Americ) and Dan Sargeant (Europe).
Remaining members through 2010 are Jasper Rees (Africa) and Eric van de
Weg (Europe). Two new members are needed to serve two year terms where
we are seeking at least one to be outside of Europe. Please nominate
candidates and again confirm their interest before submitting your
nominations.
US Rosaceae Genomics, Genetics and Breeding community members may
nominate as many candidates as you wish at this stage by sending a list
of the nominees to membership chair, Nahla Bassil at
nahla.bassil(a)ars.usda.gov. You have until November 20th to nominate
candidates. Following these nominations, we will compile a candidate
list for the actual vote via a webform. If you have any questions
please contact Nahla Bassil at the aforementioned email address.
Many thanks
Nahla Bassil
Plant Geneticist
USDA-ARS, NCGR
33447 Peoria Rd.
Corvallis, OR 97333-2521
Tel: (541) 738-4214
Fax: (541) 738-4205
nahla.bassil(a)ars.usda.gov
Thank you to the members who nominated new members and a quick reminder
that the deadline for new nominations is Friday November 20th.
Dear US Based Rosaceae Genomics and Genetics Community,
It is time to nominate the 2010 USRosEXEC and International Liaison
Members.
After three/four years of excellent service the following US members are
rotating off the RosEXEC committee:
* Albert Abbott (Amygdaloideae, Univ, S),
* Chad Finn (Rosoideae, ARS, W),
* Abhaya Dandekar (Maloideae, Amygdaloideae Univ, W)
* Schuyler Korban (Maloideae, Univ, E)
* Gennaro Fazio (Maloideae, ARS, E)
The committee thus loses:
* 1 Rosoideae, 2.5 Maloideae and 1.5 Amygdaloideae crop focus
representatives;
* 3 university and 2 ARS representatives;
* 2 eastern location (E), 2 western location and 1 southern (S)
location representatives.
Members who will continue to serve in 2009 include Nahla Bassil, Chris
Dardick, Amit Dhingra, Jim Luby, Gayle Volk, Angela Baldo, Jim Hancock,
Jim McFerson, Bryon Sosinski, Philip Stewart and Cameron Peace, so no
need to nominate them as they will already be serving.
To help maintain a balanced committee, we are asking you to nominate, by
email, research and industry community members of whom one should have a
major focus on Rosoideae, two on Maloideae and two on Amygdaloideae.
Individuals with mixed focus can also be nominated. Please take this
into account when you nominate candidates and please confirm with the
prospective candidates that they are willing to be nominated and
potentially serve before you submit them as candidates to Nahla.
International liaison members rotating off this year include Sue
Gardiner (Aus/NZ), Herman Silva (South America) and Dan Sargent
(Europe). Remaining members through 2010 are Jasper Rees (Africa) and
Eric van de Weg (Europe). Two new members are needed to serve two year
terms where we are seeking at least one to be outside of Europe. Please
nominate candidates and again confirm their interest before submitting
your nominations.
US Rosaceae Genomics, Genetics and Breeding community members may
nominate as many candidates as you wish at this stage by sending a list
of the nominees to membership chair, Nahla Bassil at
nahla.bassil(a)ars.usda.gov. You have until November 20th to nominate
candidates. Following these nominations, we will compile a candidate
list for the actual vote via a webform. If you have any questions
please contact Nahla Bassil at the aforementioned email address.
Many thanks,
Nahla Bassil
Plant Geneticist
USDA-ARS, NCGR
33447 Peoria Rd.
Corvallis, OR 97333-2521
Tel: (541) 738-4214
Fax: (541) 738-4205
nahla.bassil(a)ars.usda.gov
Dear US Based Rosaceae Genomics and Genetics Community,
It is time to nominate the 2010 USRosEXEC and International Liaison
Members.
After three/four years of excellent service the following US members are
rotating off the RosEXEC committee:
* Albert Abbott (Amygdaloideae, Univ, S),
* Chad Finn (Rosoideae, ARS, W),
* Abhaya Dandekar (Maloideae, Amygdaloideae Univ, W)
* Schuyler Korban (Maloideae, Univ, E)
* Gennaro Fazio (Maloideae, ARS, E)
The committee thus loses:
* 1 Rosoideae, 2.5 Maloideae and 1.5 Amygdaloideae crop focus
representatives;
* 3 university and 2 ARS representatives;
* 2 eastern location (E), 2 western location and 1 southern (S)
location representatives.
Members who will continue to serve in 2009 include Nahla Bassil, Chris
Dardick, Amit Dhingra, Jim Luby, Gayle Volk, Angela Baldo, Jim Hancock,
Jim McFerson, Bryon Sosinski, Philip Stewart and Cameron Peace, so no
need to nominate them as they will already be serving.
To help maintain a balanced committee, we are asking you to nominate, by
email, research and industry community members of whom one should have a
major focus on Rosoideae, two on Maloideae and two on Amygdaloideae.
Individuals with mixed focus can also be nominated. Please take this
into account when you nominate candidates and please confirm with the
prospective candidates that they are willing to be nominated and
potentially serve before you submit them as candidates to Nahla.
International liaison members rotating off this year include Sue
Gardiner (Aus/NZ), Herman Silva (South America) and Dan Sargent
(Europe). Remaining members through 2010 are Jasper Rees (Africa) and
Eric van de Weg (Europe). Two new members are needed to serve two year
terms where we are seeking at least one to be outside of Europe. Please
nominate candidates and again confirm their interest before submitting
your nominations.
US Rosaceae Genomics, Genetics and Breeding community members may
nominate as many candidates as you wish at this stage by sending a list
of the nominees to membership chair, Nahla Bassil at
nahla.bassil(a)ars.usda.gov. You have until November 20th to nominate
candidates. Following these nominations, we will compile a candidate
list for the actual vote via a webform. If you have any questions
please contact Nahla Bassil at the aforementioned email address.
Many thanks,
Nahla Bassil
Plant Geneticist
USDA-ARS, NCGR
33447 Peoria Rd.
Corvallis, OR 97333-2521
Tel: (541) 738-4214
Fax: (541) 738-4205
nahla.bassil(a)ars.usda.gov
________________________________
From: Pankaj Jaiswal (OSU) [mailto:jaiswalp@science.oregonstate.edu]
Sent: Wed 7/15/2009 11:27 AM
To: Main, Doreen
Subject: Research Associate (Post Doc) at Oregon State Univ.
Please post to the GDR list.
Thanks
Pankaj
Position Title: Research Associate (Post Doc)
The Department of Botany and Plant Pathology has an immediate opening
for a Research Associate (Post Doc) to work on a cereal plant genome
wide gene expression analysis. This is a full-time, (1.0 FTE),
12-month, fixed-term position working in Dr. Pankaj Jaiswal's lab
(http://www.science.oregonstate.edu/bpp/).
How to Apply:
To review the position description and apply, go to posting #0004455 at
http://oregonstate.edu/jobs. When applying, you will be required to
electronically submit your application, a Letter of Intent, and a
Curriculum Vitae (including 3 references). For full consideration,
apply by 07/31/09 when review of applications will begin.
This position is required to develop a comprehensive gene expression
catalog of rice and other cereal plant genes in various the plant
development stages. The project includes histological studies, whole
genome transcriptome and proteome data generation and analysis. The
incumbent will be responsible for designing microarray and whole genome
transcriptome/digital gene expression experiment(s) using newer high
throughput sequencing technologies developed by Illumina,
454-LifeSciences, etc. Development of methods suitable to the
experimental conditions and plant material being investigated, carrying
out the experiments on analysis of anatomical samples using microscopy
and whole genome transcriptome, data analysis and publication of the
results in peer reviewed journals and submission to major data
repositories. Besides this, the incumbent will also participate in lab's
outreach activities, help in mentoring undergraduates and graduate students.
Successful candidate will work with existing lab personnel and various
collaborators that includes project PIs, faculty, highly trained PhD.
level bioinformatics specialists, software developers and the
department's fellow postdoc and graduate students.
Required qualifications:
- PhD in Plant Biology, Molecular Biology, Genetics, Biochemistry,
Biological
Chemistry, Metabolomics, or related field.
- Worked previously on gene expression data generation and analysis in
their PhD studies or postdoctoral training. Demonstrated expertise in
studying plant development, anatomy, histology, microarrays, gene
expression, proteomics, genetics and general understanding of plant
biochemistry and gene regulation.
- Demonstrated ability for independent and critical thinking, excellent
communication skills in oral and written presentations in English and
ability to work in teams.
Pankaj Jaiswal
Assistant Professor
Dept. of Botany and Plant Pathology
3082 Cordley Hall
Oregon State University
Corvallis, OR, 97331-2902, USA
Subject: [Hort-All] 2009 Molecular Markers in Horticulture Symposium 4thAnnouncement
<http://rs6.net/tn.jsp?et=1102556298233&s=9324&e=001YnVzJ9VNYstWuHoFoLvgvo9B…>
Fourth Announcement
Abstract Submission Deadline Extended: May 1st
Deadline for early registration: 20 April, 2009
Late registration fees are incurred after April 20th.
If you need a Letter of Invitation for your visa application, please contact:
Wambui Njuguna njugunaw(a)onid.orst.edu <mailto:njugunaw@onid.orst.edu>
A draft of the program is available at http://oregonstate.edu/conferences/molecularmarkers2009 <http://rs6.net/tn.jsp?et=1102556298233&s=9324&e=001YnVzJ9VNYstWuHoFoLvgvo9B…>
Please join us!
On behalf of the Biotechnology Commission of the International Society for Horticultural Sciences (ISHS), the convener and local organizing committee invite you to participate in a symposium devoted to Molecular Markers in Horticulture. The symposium will be held July 29 to August 1, 2009 at the Alumni Center located on the Oregon State University (OSU) campus in Corvallis, Oregon.
Program Information:
You are invited to submit papers on DNA-based markers, applications of next-generation sequencing and analytical tools and bioinformatics as they pertain to horticultural crops. You will tour the OSU CGRB Core Laboratory which provides services in genomics, functional genomics, biocomputing and bioinformatics and the USDA ARS Corvallis Genebank <http://rs6.net/tn.jsp?et=1102556298233&s=9324&e=001YnVzJ9VNYstw_BEM7bRgvh_E…> where molecular markers are used for managing world collections of hazelnut, pear and many berry crops. During the symposium, you will have an opportunity to explore the state of molecular marker science in 5 sections:
1. Plant Germplasm Identification and Characterization
2. Marker-assisted Breeding
3. Molecular Markers in Phylogenetics and Evolution
4. Analytical Approaches and Bioinformatics
5. Applications of Next-Generation Sequencing
Important Deadlines
April 20, 2009
April 20, 2009
May 1, 2009
June 5, 2009
June 25, 2009
June 25, 2009
Early Registration Ends
Abstracts due to Scientific Committee
Author notifications if accepted, oral/poster
Manuscripts due for publication in Acta Horticulturae
Hotel reservations due
Registration for post-conference tour closes
Location:
You will enjoy the mild summer temperatures in Western Oregon moderated by the nearby Pacific Ocean, the beautiful coniferous forests in the adjacent Coast and Cascade mountain ranges, and you will sample the award-winning wines from local small vineyards and the abundant seasonal vegetables, fruits and berries.
*Limited financial assistance may become available. Please check the request assistance box on the registration form to be placed on a waiting list for financial assistance.
This symposium is organized by the ISHS, USDA-ARS and OSU
Sponsors for Molecular Markers in Horticulture 2009
OSU Conference Services | 200 LaSells Stewart Center | Corvallis, OR 97331
Tel: (541) 737-9300 conferences(a)oregonstate.edu <mailto:%20conferences@oregonstate.edu> Fax: (541) 737-9315
Forward email <http://ui.constantcontact.com/sa/fwtf.jsp?m=1101658764278&ea=hort-all%40hor…>
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Oregon State University Conference Services | OSU Conference Services | 100 LaSells Stewart Center | Corvallis | OR | 97331
________________________________
From: Nahla Basil [mailto:conferences@oregonstate.edu]
Sent: Mon 4/13/2009 11:22 AM
To: Main, Doreen
Subject: Reminder to Register for Molecular Markers in Horticulture Symposium 2009
REMINDER
Deadline for registration and abstract submission: 20 April, 2009
If you need a Letter of Invitation for your visa application, please contact: Wambui Njuguna njugunaw(a)onid.orst.edu
A draft of the program with keynote speakers for each section is now available.
Visit the Symposium website:http://oregonstate.edu/conferences/molecularmarkers2009 <http://rs6.net/tn.jsp?et=1102549237474&s=9322&e=0017ExMIkBxgwG5e4eblnSgQ0Sm…>
Looking forward to see you at this timely and exciting symposium,
Best regards,
Nahla Bassil, Convener
Plant Molecular Geneticist
USDA-ARS, NCGR
33447 Peoria Rd.
Corvallis, OR 97333-2521
Tel: (541) 738-4214
Fax: (541) 738-4205
bassiln(a)hort.oregonstate.edu
nahla.bassil(a)ars.usda.gov
On behalf of the Biotechnology Commission of the International Society for Horticultural Sciences (ISHS), the convener and local organizing committee invite you to participate in a symposium devoted to Molecular Markers in Horticulture. The symposium will be held July 29 to August 1, 2009 at the Alumni Center located on the Oregon State University (OSU) campus in Corvallis, Oregon.
Program Information:
IYou are invited to submit papers on DNA-based markers, applications of next-generation sequencing and analytical tools and bioinformatics as they pertain to horticultural crops. You will tour the OSU's CGRB Core Laboratories <http://rs6.net/tn.jsp?et=1102549237474&s=9322&e=0017ExMIkBxgwFcghpPI9zU2FXa…> which provides services in genomics, functional genomics, biocomputing and bioinformatics and the USDA ARS Corvallis genebank <http://rs6.net/tn.jsp?et=1102549237474&s=9322&e=0017ExMIkBxgwHozEl6hzI1wQEu…> where molecular markers are used for managing world collections of hazelnut, pear and many berry crops. During the symposium, you will have an opportunity to explore the state of molecular marker science in 5 sections:
1. Plant Germplasm Identification and Characterization
2. Marker-assisted Breeding
3. Molecular Markers in Phylogenetics and Evolution
4. Analytical Approaches and Bioinformatics
5. Applications of Next-Generation Sequencing
Important Deadlines
April 20, 2009
April 20, 2009
May 1, 2009
June 5, 2009
June 25, 2009
June 25, 2009
Early Registration Ends
Abstracts due to Scientific Committee
Author notifications if accepted, oral/poster
Manuscripts due for publication in Acta Horticulturae
Hotel reservations due
Registration for post-conference tour closes
*Limited financial assistance may become available. Please check the request assistance box on the registration form to be placed on a waiting list for financial assistance.
Location:
You will enjoy the mild summer temperatures in Western Oregon moderated by the nearby Pacific Ocean, the beautiful coniferous forests in the adjacent Coast and Cascade mountain ranges, and you will sample the award-winning wines from local small vineyards and the abundant seasonal vegetables, fruits and berries.
This symposium is organized by the ISHS, USDA-ARS and OSU
Sponsors for Molecular Markers in Horticulture 2009
OSU Conference Services | 200 LaSells Stewart Center | Corvallis, OR 97331
Tel: (541) 737-9300 conferences(a)oregonstate.edu <mailto:%20conferences@oregonstate.edu> Fax: (541) 737-9315
Forward email <http://ui.constantcontact.com/sa/fwtf.jsp?m=1101658764278&ea=dorrie%40wsu.e…>
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Oregon State University Conference Services | OSU Conference Services | 200 LaSells Stewart Center | Corvallis | OR | 97331
Got it. Many thanks.
Nnadozie
-----Original Message-----
From: Charles-Eric Durel [mailto:Charles-Eric.Durel@angers.inra.fr]
Sent: Monday, March 09, 2009 1:40 AM
To: Nnadozie Oraguzie
Cc: gdr-list(a)bioinfo.wsu.edu
Subject: Re: [GDR] RosBREED M-TA table update
Hi Nnadozie,
Another paper on apple : fire blight resistance QTL in wild/ornamental
Malus.
Best regards,
CE
Nnadozie Oraguzie a écrit :
>
> Hi folks,
>
> Its that time of the year again for SCRI grant proposals! We would
> like to update the Rosaceae marker-trait association (M-TA) table
> prepared last year for the RoseBREED proposal. We are particularly
> interested in any new QTLs, major gene loci, genes and linked markers
> that may have been discovered and probably published since the last
> table was created. Please provide the information using the format in
> the last table which you will find at the following links:
>
> Full information:
>
http://www.hrt.msu.edu/faculty/Iezzoni/Links/TABLE%20of%20M-T%20associations
%20for%20website_Sept2008.pdf
>
>
> Summary Table:
>
http://www.hrt.msu.edu/faculty/Iezzoni/Links/Summary%20Table%20of%20MT%20Ass
ociations.pdf
>
> That is, the information should follow the sequence: species, trait,
> QTL, major trait locus, genes (including LGs for genes/major loci and
> LGs, LOD score, percentage of variation explained for QTLs),
> source/population, linked markers, references, use in MAPS (i.e.,
> marker-assisted parent selection) and MASS (marker-assisted seedling
> selection). I would appreciate if you could include the full citation
> details for all references in the full information table. Please send
> the information to me by the 25^th of March 2009.
>
> Thank you so much for your assistance.
>
> Nnadozie
>
> Nnadozie Oraguzie
>
> Associate Professor
>
> Prunus Breeding, Genetics & Genomics
>
> Department of Horticulture & Landscape Architecture
>
> Washington State University-IAREC
>
> 24106 N Bunn Road Prosser
>
> WA 99350 USA
>
> Tel: 1 509 786 9271
>
> Fax: 1 509 786 9370
>
> E-mail:noraguzie@wsu.edu
>
> ------------------------------------------------------------------------
>
> _______________________________________________
> Main Bioinformatics Laboratory
> GDR-LIST mailing list
> GDR-LIST(a)mail.bioinfo.wsu.edu
Hi folks,
It's that time of the year again for SCRI grant proposals! We would like to
update the Rosaceae marker-trait association (M-TA) table prepared last year
for the RoseBREED proposal. We are particularly interested in any new QTLs,
major gene loci, genes and linked markers that may have been discovered and
probably published since the last table was created. Please provide the
information using the format in the last table which you will find at the
following links:
Full information:
http://www.hrt.msu.edu/faculty/Iezzoni/Links/TABLE%20of%20M-T%20associations
%20for%20website_Sept2008.pdf
Summary Table:
http://www.hrt.msu.edu/faculty/Iezzoni/Links/Summary%20Table%20of%20MT%20Ass
ociations.pdf
That is, the information should follow the sequence: species, trait, QTL,
major trait locus, genes (including LGs for genes/major loci and LGs, LOD
score, percentage of variation explained for QTLs), source/population,
linked markers, references, use in MAPS (i.e., marker-assisted parent
selection) and MASS (marker-assisted seedling selection). I would appreciate
if you could include the full citation details for all references in the
full information table. Please send the information to me by the 25th of
March 2009.
Thank you so much for your assistance.
Nnadozie
Nnadozie Oraguzie
Associate Professor
Prunus Breeding, Genetics & Genomics
Department of Horticulture & Landscape Architecture
Washington State University-IAREC
24106 N Bunn Road Prosser
WA 99350 USA
Tel: 1 509 786 9271
Fax: 1 509 786 9370
E-mail:noraguzie@wsu.edu