GDR-LIST

gdr-list@bioinfo.wsu.edu

328 discussions

BIMS Webinar on November 28, 8.30 PST/11.30 EST AM

by Jung, Sook

Zoom Info Join from PC, Mac, Linux, iOS, or Android: https://urldefense.com/v3/__https://wsu.zoom.us/j/93646942616__;!!JmPEgBY0H… Meeting ID: 936 4694 2616 https://urldefense.com/v3/__http://www.breedwithbims.org__;!!JmPEgBY0HMszNa… <https://urldefense.com/v3/__http://www.breedwithbims.org/__;!!JmPEgBY0HMszN… > [cid:a968c967-c87c-4b6d-b755-d4adcf9b9d4b] Sook Jung, Ph.D. (she/her) Associate Professor of Bioinformatics Department of Horticulture Washington State University Email: sook_jung(a)wsu.edu<mailto:sook_jung@wsu.edu> ORCID: 0000-0003-3968-2769 Publications: Google Scholar<https://urldefense.com/v3/__https://scholar.google.com/citations?user=Z4C1M… >

1 year, 6 months

New Postdoc position at Auburn University

by Jung, Sook

The Small Fruit Breeding Program at Auburn University is seeking a quantitative geneticist/data curator/outreach specialist (Post Doc Fellow) to support the research activities of a recently funded four-year USDA Specialty Crops Research Initiative Program award to Washington State University, Clemson University, University of Florida, Auburn University, University of Queensland, and USDA ARS. Please see below for details https://urldefense.com/v3/__https://www.rosaceae.org/sites/default/files/fi… Best, Sook Sook Jung, Ph.D. (she/her) Associate Professor of Bioinformatics Department of Horticulture Washington State University Email: sook_jung(a)wsu.edu<mailto:sook_jung@wsu.edu> ORCID: 0000-0003-3968-2769 Publications: Google Scholar<https://urldefense.com/v3/__https://scholar.google.com/citations?user=Z4C1M… >

1 year, 7 months

Nomination for RosEXEC

by Jung, Sook

Dear Rosaceae Community, We are seeking nominations for individuals to serve a three-year term (U.S. members) and two-year term (International Liaisons) on the U.S. Rosaceae Genomics, Genetics, and Breeding Executive Committee (RosEXEC)<https://urldefense.com/v3/__https://www.rosaceae.org/community/us_rosexec__…>. There are four (4) open seats on the 15-member Committee<https://urldefense.com/v3/__https://www.rosaceae.org/community/rosexec_2022…> and two (2) open seats for International Liaisons to serve Asia and South America. Please consider nominating a colleague you consider would actively contribute to supporting the mission of RosEXEC: * Serve as a communication and coordination focal point for the U.S. Rosaceae genomics, genetics and breeding community * Define research priorities based on input from the industry and research community * Facilitate scientific interaction and foster dynamic research teams * Promote research priorities * Coordinate educational efforts from the research community to the industry and the public Committee members are expected to participate in quarterly telephone conference meetings. Additional roles and responsibilities are available on the RosEXEC website (https://urldefense.com/v3/__https://www.rosaceae.org/community/us_rosexec__… <https://urldefense.com/v3/__https://www.rosaceae.org/community/us_rosexec__…>). Nominators must contact nominees and confirm willingness to serve on RosEXEC. Nominees should then submit a brief bio and vision statement and a brief CV. A community-wide election will be managed by the Genome Database for Rosaceae starting November 1st, 2023. Send nomination packages by October 20th to Jonathan Fresnedo Ramirez (fresnedoramirez.1(a)osu.edu<mailto:fresnedoramirez.1@osu.edu>), Vice-Chair of RosEXEC. Thanks, RosEXEC Leadership

1 year, 8 months

Call for nominations - RosEXEC

by Jung, Sook

1 year, 8 months

GDR relevant training workshop at ASHS - today at 10.15

by Main, Doreen

If you are attending the ASH annual conference, please consider joining us at 10.15 today for a database training workshop. [cid:280b6d3f-cbed-4933-b251-12bd2c12ea56] [cid:7e18da5a-a65c-4696-9736-b8092b3fcffe] Dorrie Main, Ph.D. Mainlab Bioinformatics: Actively prioritizing diversity, equity, and inclusion as core principles of our program Professor of Bioinformatics Department of Horticulture Washington State University 303c Plant Sciences Building Pullman, WA 99164-6414 Tel: 509-335-2774 (office) Email: dorrie(a)wsu.edu<mailto:dorrie@wsu.edu> URL: http://www.bioinfo.wsu.edu<http://www.bioinfo.wsu.edu/> Publications: Google Scholar<https://urldefense.com/v3/__https://scholar.google.com/citations?user=MvVbh… > I will listen and believe you if someone is threatening you - Lauren's Promise (see https://urldefense.com/v3/__https://www.laurenmccluskey.org/__;!!JmPEgBY0HM… ) WSU Pullman is located in the homelands of the Nimíipuu (Nez Perce) Tribe and Palus people

1 year, 9 months

How does the user community value the GDR? Discussions at next week’s ASHS conference

by Peace, Cameron

How does the user community value the GDR? If you’re attending the ASHS conference in Orlando next week and are a Rosaceae crop breeder or breeding-allied researcher, your thoughts and wisdom are needed! We’d like to discuss your ideas about user benefits of accessing GDR data and tools (such as advances, outputs, and impacts that would not be possible or would cost more or take more time if the GDR did not exist) and how the GDR could quantify those benefits across the community. We’d also like to discuss user costs to access GDR data and tools (such as user time to train on GDR content and capabilities and to access and use specific data and tools). (From next year, we plan to visit yet-to-be-chosen user programs across the U.S. for in-depth case studies on such benefits and costs.) It would be great if you could participate in one of the 1-hour discussion sessions to be held during the conference, on Thursday Aug 3 at 1:00—2:00 pm and 4:30—5:30 pm in Antigua 4 room of the conference venue. Email me at cpeace(a)wsu.edu<mailto:cpeace@wsu.edu> to RSVP or find out more, or just turn up to the room at the start of a session. Also, remember to attend the workshop on Thursday morning, 10:15—12:15, “Hands-on Training for Effective Use, Data Contribution, and Options for Long Term Sustainability of Specialty Crop Community Databases<https://urldefense.com/v3/__https://ashs.confex.com/ashs/2023/meetingapp.cg… >” and participate in an interactive workshop to accelerate your research! Cameron Peace, on behalf of the GDR

1 year, 10 months

New Research Associate position!!!

by Ksenija Gasic

Gasic Lab at Clemson University is hiring! We are looking for Data Curation/outreach specialist to support research activities on exciting new SCRI project. This highly collaborative project includes a diverse team of researchers working on crop breeding, genomics, genetics, curation, and bioinformatics. Successful applicant will be working on curating Genome Database for Rosaceae. See more information in the attached description and apply here<https://jobs.clemson.edu/psc/ps/JOBS/EXT/c/HRS_HRAM_FL.HRS_CG_SEARCH_FL.GBL…>. Ksenija ________________________________ Ksenija Gasic, Ph.D. CLEMSON UNIVERSITY Professor of Horticulture Peach Breeding and Genetics Department of Plant and Environmental Sciences President of the American Pomological Society<https://www.americanpomological.org/> Past President of the National Association of Plant Breeders<https://www.plantbreeding.org/> (NAPB) Co-convener of the National Association of Plant Breeders<https://www.plantbreeding.org/> Annual Conference<https://blogs.clemson.edu/napb2023/> Office: 306A Biosystems Research Complex |105 Collings St., Clemson, SC 29634-0310 Office phone: (864) 656-3664 Mobile: (864) 723-2009

2 years, 1 month

Canceled: RosIGI meeting

by Sara Montanari

Dear Rosaceae Genomics friends, We have decided to cancel this meeting as nobody has suggested any specific topic they wanted to discuss. The acceptance rate was quite high, though, so we will try to arrange another meeting in a few months. Please, if you are aware of projects and funding application initiative that might interest the larger Rosaceae community, let us know. Thanks We have found a date for the RosIGI meeting. Please find below the link to join the meeting via Teams. As a reminder, the purpose of RosIGI is to ensure communication among Rosaceae researchers across the world (so not only US) and coordinate international efforts on key initiatives that might be undertaken. More info here: Rosaceae International Genomics Initiative (RosIGI) | GDR<https://www.rosaceae.org/community/rosgi> I hope the many of you will be able to attend this meeting, and feel free to share this invite with anyone you think might be interested. If you would like to present or propose a topic for discussion, please get in touch with me or with any of the other international liaisons (below). For example, I am aware of several initiatives about developing genotyping platforms to 1) replace Illumina arrays that are being discontinued; 2) fill-in gaps for certain crops (i.e. Rubus); 3) multi-species SNP arrays. It would be great to have some of the researchers involved in this space to present some slides about current discussions. I’ll circulate an agenda after RGC11 ☺ Looking forward to chat with you all, Sara Montanari Sara.Montanari(a)plantandfood.co.nz<mailto:Sara.Montanari@plantandfood.co.nz> Daniele Bassi daniele.bassi(a)unimi.it<mailto:daniele.bassi@unimi.it> Yuepeng Han yphan(a)wbgcas.cn Igor P Pacheco igor.pacheco(a)inta.uchile.cl<mailto:igor.pacheco@inta.uchile.cl> Iban Eduardo Muñoz iban.eduardo(a)irta.cat<mailto:iban.eduardo@irta.cat> ________________________________________________________________________________ Microsoft Teams meeting Join on your computer, mobile app or room device Click here to join the meeting<https://teams.microsoft.com/l/meetup-join/19%3ameeting_ZGEyMGMzMWItMGZlYy00…> Meeting ID: 470 154 840 229 Passcode: du94sb Download Teams<https://www.microsoft.com/en-us/microsoft-teams/download-app> | Join on the web<https://www.microsoft.com/microsoft-teams/join-a-meeting> [cid:image001.png@01D9565E.2FEA9E80] Learn More<https://aka.ms/JoinTeamsMeeting> | Meeting options<https://teams.microsoft.com/meetingOptions/?organizerId=626aea51-ac7a-4823-…> ________________________________________________________________________________ The contents of this e-mail are confidential and may be subject to legal privilege. If you are not the intended recipient you must not use, disseminate, distribute or reproduce all or any part of this e-mail or attachments. If you have received this e-mail in error, please notify the sender and delete all material pertaining to this e-mail. Any opinion or views expressed in this e-mail are those of the individual sender and may not represent those of The New Zealand Institute for Plant and Food Research Limited.

2 years, 1 month

Postdoctoral position available in Microbiome studies

by Aranzana, Maria Jose

Dear GDR community, There is an open postdoc position in my lab. I would appreciate if you could spread the advertisement. Thanks, Maria José Aranzana Maria José Aranzana, PhD Marker-Assisted Breeding [cid:image001.jpg@01D957D8.008997B0]<https://www.cragenomica.es/>[cid:image002.png@01D957D8.008997B0] Consorci CSIC-IRTA-UAB-UB (Centre de Recerca en Agrigenòmica) Campus UAB, Edifici CRAG Bellaterra (Cerdanyola del Vallés) 08193 BARCELONA Tel: +34 935636600 ext 3316 Fax: +34 935636601 www.irta.cat<http://www.irta.cat/>; CENTRE DE RECERCA EN AGRIGENÒMICA<http://www.cragenomica.es/> Aranzana Lab<https://aranzanalabo.wordpress.com/>

2 years, 2 months

RosIGI meeting

by Sara Montanari

Dear Rosaceae Genomics friends, We have found a date for the RosIGI meeting. Please find below the link to join the meeting via Teams. As a reminder, the purpose of RosIGI is to ensure communication among Rosaceae researchers across the world (so not only US) and coordinate international efforts on key initiatives that might be undertaken. More info here: Rosaceae International Genomics Initiative (RosIGI) | GDR<https://www.rosaceae.org/community/rosgi> I hope the many of you will be able to attend this meeting, and feel free to share this invite with anyone you think might be interested. If you would like to present or propose a topic for discussion, please get in touch with me or with any of the other international liaisons (below). For example, I am aware of several initiatives about developing genotyping platforms to 1) replace Illumina arrays that are being discontinued; 2) fill-in gaps for certain crops (i.e. Rubus); 3) multi-species SNP arrays. It would be great to have some of the researchers involved in this space to present some slides about current discussions. I’ll circulate an agenda after RGC11 ☺ Looking forward to chat with you all, Sara Montanari Sara.Montanari(a)plantandfood.co.nz<mailto:Sara.Montanari@plantandfood.co.nz> Daniele Bassi daniele.bassi(a)unimi.it<mailto:daniele.bassi@unimi.it> Yuepeng Han yphan(a)wbgcas.cn Igor P Pacheco igor.pacheco(a)inta.uchile.cl<mailto:igor.pacheco@inta.uchile.cl> Iban Eduardo Muñoz iban.eduardo(a)irta.cat<mailto:iban.eduardo@irta.cat> ________________________________________________________________________________ Microsoft Teams meeting Join on your computer, mobile app or room device Click here to join the meeting<https://teams.microsoft.com/l/meetup-join/19%3ameeting_ZGEyMGMzMWItMGZlYy00…> Meeting ID: 470 154 840 229 Passcode: du94sb Download Teams<https://www.microsoft.com/en-us/microsoft-teams/download-app> | Join on the web<https://www.microsoft.com/microsoft-teams/join-a-meeting> [cid:image001.png@01D9565E.2FEA9E80] Learn More<https://aka.ms/JoinTeamsMeeting> | Meeting options<https://teams.microsoft.com/meetingOptions/?organizerId=626aea51-ac7a-4823-…> ________________________________________________________________________________ The contents of this e-mail are confidential and may be subject to legal privilege. If you are not the intended recipient you must not use, disseminate, distribute or reproduce all or any part of this e-mail or attachments. If you have received this e-mail in error, please notify the sender and delete all material pertaining to this e-mail. Any opinion or views expressed in this e-mail are those of the individual sender and may not represent those of The New Zealand Institute for Plant and Food Research Limited.

2 years, 2 months

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