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COTTONGEN-LIST December 2023

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CottonGen Year of 2023 in Review

by Yu, Jing

[A close up of a sign Description automatically generated]<http://www.cottongen.org/> More Data. We added more data in 2023 including 18 new whole genome assembly<https://www.cottongen.org/tools/jbrowse>, QTL<https://www.cottongen.org/tripal_megasearch?datatype=tripal_megasearch_qtl>, markers, genetic map<https://www.cottongen.org/tripal_megasearch?datatype=tripal_megasearch_feat…>, genotype<https://www.cottongen.org/find/snp/genotype>, and phenotype<https://www.cottongen.org/find/qualitative_traits> data. We also started adding GWAS data and added more expression data! Check the 'Data Overview<https://www.cottongen.org/data_overview/1>' page for currently available data. New and Updated Tools. MegaSearch<https://www.cottongen.org/tripal_megasearch?datatype=tripal_megasearch_qtl> and MapViewer<https://www.cottongen.org/MapViewer> are updated to display GWAS data, and the Expression Heatmap <https://www.cottongen.org/heatmap> allows researchers to quickly and easily identify patterns of gene expression that are associated with specific conditions or treatments. New Short Video Tutorials. This year we made six new video tutorials How to search cotton markers using <https://www.youtube.com/watch?v=NrwYZB_ywsg> MegaSearch<https://www.youtube.com/watch?v=NrwYZB_ywsg> How to view genomes linked to genetic maps<https://www.youtube.com/watch?v=ZHn-tIHKhfw> How to use <https://youtu.be/Ia3v650TZAg> MegaSearch<https://youtu.be/Ia3v650TZAg> for Gene and Transcripts<https://youtu.be/Ia3v650TZAg> How to search traits and see all the linked data<https://youtu.be/nKo8c7s5pHc> How to use the Expression Heatmap Tool<https://youtu.be/QU6trudNegg?si=PtobLDQSwNkiHzwQ> How to view correspondences between genomes and genetic maps<https://www.youtube.com/watch?v=dFMn9g5NsTw> NewsLetters. We sent out four quarterly NewsLetters<https://www.cottongen.org/CottonGen_newsletter> Join us at 2024 January Conferences: Beltwide Cotton Conference - Cotton Improvement Conference: Thur. Jan. 4 at 4-4:15 PM "Using CottonGen for Cotton Improvement"<https://www.cotton.org/beltwide/bw24-final-printed-program.pdf> PAG - Tripal Database Network and Initiatives Sat, Jan. 13 at 5:14-5:32 PM "TripalMap Mapviewer 2.1"<https://plan.core-apps.com/pag_2024/event/b44b10371958e4ecc7a77988eb6d8903> PAG - National Research Support Project (NRSP10) Sun, Jan. 14 at 1:30-3:40 PM Database Resources for Crop Genomics, Genetics and Breeding<https://plan.core-apps.com/pag_2024/event/2b5bdde4-f492-45ee-a07b-7d570fdd9…> PAG - Digital Tools and Resources Tue, Jan.16 at 12-12:30 PM "CottonGen<https://plan.core-apps.com/pag_2024/event/b44b10371958e4ecc7a77988eb6ad6db> 2023: New Data and New Functionality to enable cotton research discovery and crop improvement"<https://plan.core-apps.com/pag_2024/event/b44b10371958e4ecc7a77988eb6ad6db> Subscribe to the Mailing List<https://www.cottongen.org/mailing_list>

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